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MIR548AT (microRNA 548at)

Identity

Alias_symbol (synonym)hsa-mir-548at
Other alias-
HGNC (Hugo) MIR548AT
LocusID (NCBI) 100847030
Atlas_Id 77480
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 42494773 and ends at 42494830 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548AT   43517
Cards
Entrez_Gene (NCBI)MIR548AT  100847030  microRNA 548at
Aliases
GeneCards (Weizmann)MIR548AT
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:42494773-42494830 [Contig_View]  MIR548AT [Vega]
TCGA cBioPortalMIR548AT
AceView (NCBI)MIR548AT
Genatlas (Paris)MIR548AT
WikiGenes100847030
SOURCE (Princeton)MIR548AT
Genetics Home Reference (NIH)MIR548AT
miRBaseMIR548AT
dbDEMCMIR548AT
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548AT  -     chr17:42494773-42494830 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548AT  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblMIR548AT - 17q21.2 [CytoView hg19]  MIR548AT - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIMIR548AT [Mapview hg19]  MIR548AT [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548AT
Gene ExpressionMIR548AT [ NCBI-GEO ]   MIR548AT [ EBI - ARRAY_EXPRESS ]   MIR548AT [ SEEK ]   MIR548AT [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548AT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100847030
GTEX Portal (Tissue expression)MIR548AT
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548AT
DMDM Disease mutations100847030
Blocks (Seattle)MIR548AT
Protein Interaction databases
BioGRIDMIR548AT
STRING (EMBL)MIR548AT
ZODIACMIR548AT
Ontologies - Pathways
Huge Navigator MIR548AT [HugePedia]
snp3D : Map Gene to Disease100847030
BioCentury BCIQMIR548AT
ClinGenMIR548AT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100847030
Clinical trialMIR548AT
Miscellaneous
canSAR (ICR)MIR548AT (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548AT
EVEXMIR548AT
GoPubMedMIR548AT
iHOPMIR548AT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:36:12 CET 2017

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