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MIR548B (microRNA 548b)

Identity

Alias_namesMIRN548B
Alias_symbol (synonym)hsa-mir-548b
Other alias
HGNC (Hugo) MIR548B
LocusID (NCBI) 693128
Atlas_Id 54941
Location 6q22.31  [Link to chromosome band 6q22]
Location_base_pair Starts at 119069047 and ends at 119069143 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548B   32799
Cards
Entrez_Gene (NCBI)MIR548B  693128  microRNA 548b
AliasesMIRN548B
GeneCards (Weizmann)MIR548B
Ensembl hg19 (Hinxton)ENSG00000207982 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000207982 [Gene_View]  ENSG00000207982 [Sequence]  chr6:119069047-119069143 [Contig_View]  MIR548B [Vega]
ICGC DataPortalENSG00000207982
TCGA cBioPortalMIR548B
AceView (NCBI)MIR548B
Genatlas (Paris)MIR548B
WikiGenes693128
SOURCE (Princeton)MIR548B
Genetics Home Reference (NIH)MIR548B
miRBaseMIR548B
dbDEMCMIR548B
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548B  -     chr6:119069047-119069143 -  6q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548B  -     6q22.31   [Description]    (hg19-Feb_2009)
EnsemblMIR548B - 6q22.31 [CytoView hg19]  MIR548B - 6q22.31 [CytoView hg38]
Mapping of homologs : NCBIMIR548B [Mapview hg19]  MIR548B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548B
Alternative Splicing GalleryENSG00000207982
Gene ExpressionMIR548B [ NCBI-GEO ]   MIR548B [ EBI - ARRAY_EXPRESS ]   MIR548B [ SEEK ]   MIR548B [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)693128
GTEX Portal (Tissue expression)MIR548B
Human Protein AtlasENSG00000207982-MIR548B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548B
DMDM Disease mutations693128
Blocks (Seattle)MIR548B
Human Protein Atlas [tissue]ENSG00000207982-MIR548B [tissue]
Protein Interaction databases
FunCoupENSG00000207982
BioGRIDMIR548B
STRING (EMBL)MIR548B
ZODIACMIR548B
Ontologies - Pathways
Huge Navigator MIR548B [HugePedia]
snp3D : Map Gene to Disease693128
BioCentury BCIQMIR548B
ClinGenMIR548B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD693128
Chemical/Pharm GKB GenePA164722820
Clinical trialMIR548B
Miscellaneous
canSAR (ICR)MIR548B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548B
EVEXMIR548B
GoPubMedMIR548B
iHOPMIR548B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:22:21 CET 2018

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