Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR548F1 (microRNA 548f-1)

Identity

Alias_namesMIRN548F1
Alias_symbol (synonym)hsa-mir-548f-1
Other aliasMIR548F-1
HGNC (Hugo) MIR548F1
LocusID (NCBI) 100302192
Atlas_Id 69822
Location 10q21.1  [Link to chromosome band 10q21]
Location_base_pair Starts at 54607874 and ends at 54607957 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANP32A (15q23) / MIR548F1 (1q31.1)MIR548F1 (1q31.1) / MET (7q31.2)MIR548F1 (1q31.1) / MIR548F1 (1q31.1)
MIR548F1 (1q31.1) / NTRK1 (1q23.1)MIR548F1 (1q31.1) / SPG21 (15q22.31)PDLIM5 (4q22.3) / MIR548F1 (1q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548F1   35305
Cards
Entrez_Gene (NCBI)MIR548F1  100302192  microRNA 548f-1
AliasesMIR548F-1; MIRN548F1; hsa-mir-548f-1
GeneCards (Weizmann)MIR548F1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:54607874-54607957 [Contig_View]  MIR548F1 [Vega]
TCGA cBioPortalMIR548F1
AceView (NCBI)MIR548F1
Genatlas (Paris)MIR548F1
WikiGenes100302192
SOURCE (Princeton)MIR548F1
Genetics Home Reference (NIH)MIR548F1
miRBaseMIR548F1
dbDEMCMIR548F1
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548F1  -     chr10:54607874-54607957 -  10q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548F1  -     10q21.1   [Description]    (hg19-Feb_2009)
EnsemblMIR548F1 - 10q21.1 [CytoView hg19]  MIR548F1 - 10q21.1 [CytoView hg38]
Mapping of homologs : NCBIMIR548F1 [Mapview hg19]  MIR548F1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548F1
Gene ExpressionMIR548F1 [ NCBI-GEO ]   MIR548F1 [ EBI - ARRAY_EXPRESS ]   MIR548F1 [ SEEK ]   MIR548F1 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548F1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100302192
GTEX Portal (Tissue expression)MIR548F1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548F1
DMDM Disease mutations100302192
Blocks (Seattle)MIR548F1
Protein Interaction databases
BioGRIDMIR548F1
STRING (EMBL)MIR548F1
ZODIACMIR548F1
Ontologies - Pathways
Huge Navigator MIR548F1 [HugePedia]
snp3D : Map Gene to Disease100302192
BioCentury BCIQMIR548F1
ClinGenMIR548F1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100302192
Chemical/Pharm GKB GenePA164722825
Clinical trialMIR548F1
Miscellaneous
canSAR (ICR)MIR548F1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548F1
EVEXMIR548F1
GoPubMedMIR548F1
iHOPMIR548F1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:22:09 CET 2017

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