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MIR548F1 (microRNA 548f-1)

Identity

Alias (NCBI)MIR548F-1
MIRN548F1
hsa-mir-548f-1
HGNC (Hugo) MIR548F1
HGNC Alias symbhsa-mir-548f-1
HGNC Previous nameMIRN548F1
LocusID (NCBI) 100302192
Atlas_Id 69822
Location 10q21.1  [Link to chromosome band 10q21]
Location_base_pair Starts at 54607874 and ends at 54607957 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANP32A (15q23) / MIR548F1 (1q31.1)MIR548F1 (1q31.1) / MET (7q31.2)MIR548F1 (1q31.1) / MIR548F1 (1q31.1)
MIR548F1 (1q31.1) / NTRK1 (1q23.1)MIR548F1 (1q31.1) / SPG21 (15q22.31)PDLIM5 (4q22.3) / MIR548F1 (1q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)MIR548F1   35305
Cards
Entrez_Gene (NCBI)MIR548F1    microRNA 548f-1
AliasesMIR548F-1; MIRN548F1; hsa-mir-548f-1
GeneCards (Weizmann)MIR548F1
Ensembl hg19 (Hinxton)ENSG00000221594 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221594 [Gene_View]  ENSG00000221594 [Sequence]  chr10:54607874-54607957 [Contig_View]  MIR548F1 [Vega]
ICGC DataPortalENSG00000221594
TCGA cBioPortalMIR548F1
AceView (NCBI)MIR548F1
Genatlas (Paris)MIR548F1
SOURCE (Princeton)MIR548F1
Genetics Home Reference (NIH)MIR548F1
miRBaseMIR548F1
dbDEMCMIR548F1
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548F1  -     chr10:54607874-54607957 -  10q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548F1  -     10q21.1   [Description]    (hg19-Feb_2009)
GoldenPathMIR548F1 - 10q21.1 [CytoView hg19]  MIR548F1 - 10q21.1 [CytoView hg38]
ImmunoBaseENSG00000221594
Genome Data Viewer NCBIMIR548F1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548F1
Gene ExpressionMIR548F1 [ NCBI-GEO ]   MIR548F1 [ EBI - ARRAY_EXPRESS ]   MIR548F1 [ SEEK ]   MIR548F1 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548F1 [ Firebrowse - Broad ]
GenevisibleExpression of MIR548F1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100302192
GTEX Portal (Tissue expression)MIR548F1
Human Protein AtlasENSG00000221594-MIR548F1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548F1
Human Protein Atlas [tissue]ENSG00000221594-MIR548F1 [tissue]
Protein Interaction databases
BioGRIDMIR548F1
STRING (EMBL)MIR548F1
ZODIACMIR548F1
Ontologies - Pathways
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMIR548F1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:09:49 CEST 2021

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