Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MIR548F5 (microRNA 548f-5)

Identity

Alias_namesMIRN548F5
Alias_symbol (synonym)hsa-mir-548f-5
Other aliasMIR548F-5
HGNC (Hugo) MIR548F5
LocusID (NCBI) 100302239
Atlas_Id 69826
Location Xp21.1  [Link to chromosome band Xp21]
Location_base_pair Starts at 32641474 and ends at 32641559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MIR548F5   35309
Cards
Entrez_Gene (NCBI)MIR548F5  100302239  microRNA 548f-5
AliasesMIR548F-5; MIRN548F5; hsa-mir-548f-5
GeneCards (Weizmann)MIR548F5
Ensembl hg19 (Hinxton)ENSG00000221348 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221348 [Gene_View]  ENSG00000221348 [Sequence]  chrX:32641474-32641559 [Contig_View]  MIR548F5 [Vega]
ICGC DataPortalENSG00000221348
TCGA cBioPortalMIR548F5
AceView (NCBI)MIR548F5
Genatlas (Paris)MIR548F5
WikiGenes100302239
SOURCE (Princeton)MIR548F5
Genetics Home Reference (NIH)MIR548F5
miRBaseMIR548F5
dbDEMCMIR548F5
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548F5  -     chrX:32641474-32641559 -  Xp21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548F5  -     Xp21.1   [Description]    (hg19-Feb_2009)
GoldenPathMIR548F5 - Xp21.1 [CytoView hg19]  MIR548F5 - Xp21.1 [CytoView hg38]
ImmunoBaseENSG00000221348
Mapping of homologs : NCBIMIR548F5 [Mapview hg19]  MIR548F5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548F5
Alternative Splicing GalleryENSG00000221348
Gene ExpressionMIR548F5 [ NCBI-GEO ]   MIR548F5 [ EBI - ARRAY_EXPRESS ]   MIR548F5 [ SEEK ]   MIR548F5 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548F5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100302239
GTEX Portal (Tissue expression)MIR548F5
Human Protein AtlasENSG00000221348-MIR548F5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548F5
DMDM Disease mutations100302239
Blocks (Seattle)MIR548F5
Human Protein Atlas [tissue]ENSG00000221348-MIR548F5 [tissue]
Protein Interaction databases
FunCoupENSG00000221348
BioGRIDMIR548F5
STRING (EMBL)MIR548F5
ZODIACMIR548F5
Ontologies - Pathways
Huge Navigator MIR548F5 [HugePedia]
snp3D : Map Gene to Disease100302239
BioCentury BCIQMIR548F5
ClinGenMIR548F5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100302239
Chemical/Pharm GKB GenePA164722829
Clinical trialMIR548F5
Miscellaneous
canSAR (ICR)MIR548F5 (select the gene name)
DataMed IndexMIR548F5
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548F5
EVEXMIR548F5
GoPubMedMIR548F5
iHOPMIR548F5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:54:48 CEST 2019
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