Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIR548F5 (microRNA 548f-5)

Identity

Alias_namesMIRN548F5
Alias_symbol (synonym)hsa-mir-548f-5
Other aliasMIR548F-5
HGNC (Hugo) MIR548F5
LocusID (NCBI) 100302239
Atlas_Id 69826
Location 13q13.3  [Link to chromosome band 13q13]
Location_base_pair Starts at 36048406 and ends at 36515382 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548F5   35309
Cards
Entrez_Gene (NCBI)MIR548F5  100302239  microRNA 548f-5
AliasesMIR548F-5; MIRN548F5; hsa-mir-548f-5
GeneCards (Weizmann)MIR548F5
Ensembl hg19 (Hinxton) [Gene_View]  chr13:36048406-36515382 [Contig_View]  MIR548F5 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:36048406-36515382 [Contig_View]  MIR548F5 [Vega]
TCGA cBioPortalMIR548F5
AceView (NCBI)MIR548F5
Genatlas (Paris)MIR548F5
WikiGenes100302239
SOURCE (Princeton)MIR548F5
Genetics Home Reference (NIH)MIR548F5
miRBaseMIR548F5
dbDEMCMIR548F5
Genomic and cartography
GoldenPath hg19 (UCSC)MIR548F5  -     chr13:36048406-36515382 -  13q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MIR548F5  -     13q13.3   [Description]    (hg38-Dec_2013)
EnsemblMIR548F5 - 13q13.3 [CytoView hg19]  MIR548F5 - 13q13.3 [CytoView hg38]
Mapping of homologs : NCBIMIR548F5 [Mapview hg19]  MIR548F5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)MIR548F5
Gene ExpressionMIR548F5 [ NCBI-GEO ]   MIR548F5 [ EBI - ARRAY_EXPRESS ]   MIR548F5 [ SEEK ]   MIR548F5 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548F5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100302239
GTEX Portal (Tissue expression)MIR548F5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548F5
DMDM Disease mutations100302239
Blocks (Seattle)MIR548F5
Protein Interaction databases
BioGRIDMIR548F5
STRING (EMBL)MIR548F5
ZODIACMIR548F5
Ontologies - Pathways
Huge Navigator MIR548F5 [HugePedia]
snp3D : Map Gene to Disease100302239
BioCentury BCIQMIR548F5
ClinGenMIR548F5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100302239
Clinical trialMIR548F5
Miscellaneous
canSAR (ICR)MIR548F5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548F5
EVEXMIR548F5
GoPubMedMIR548F5
iHOPMIR548F5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:31:29 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.