Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR548H1 (microRNA 548h-1)

Identity

Alias_namesMIRN548H1
Alias_symbol (synonym)hsa-mir-548h-1
Other aliasMIR548H-1
HGNC (Hugo) MIR548H1
LocusID (NCBI) 100313830
Atlas_Id 76722
Location 14q23.2  [Link to chromosome band 14q23]
Location_base_pair Starts at 64095024 and ends at 64095125 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548H1   35342
Cards
Entrez_Gene (NCBI)MIR548H1  100313830  microRNA 548h-1
AliasesMIR548H-1; MIRN548H1
GeneCards (Weizmann)MIR548H1
Ensembl hg19 (Hinxton)ENSG00000221537 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221537 [Gene_View]  chr14:64095024-64095125 [Contig_View]  MIR548H1 [Vega]
ICGC DataPortalENSG00000221537
TCGA cBioPortalMIR548H1
AceView (NCBI)MIR548H1
Genatlas (Paris)MIR548H1
WikiGenes100313830
SOURCE (Princeton)MIR548H1
Genetics Home Reference (NIH)MIR548H1
miRBaseMIR548H1
dbDEMCMIR548H1
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548H1  -     chr14:64095024-64095125 -  14q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548H1  -     14q23.2   [Description]    (hg19-Feb_2009)
EnsemblMIR548H1 - 14q23.2 [CytoView hg19]  MIR548H1 - 14q23.2 [CytoView hg38]
Mapping of homologs : NCBIMIR548H1 [Mapview hg19]  MIR548H1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548H1
Alternative Splicing GalleryENSG00000221537
Gene ExpressionMIR548H1 [ NCBI-GEO ]   MIR548H1 [ EBI - ARRAY_EXPRESS ]   MIR548H1 [ SEEK ]   MIR548H1 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548H1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100313830
GTEX Portal (Tissue expression)MIR548H1
Human Protein AtlasENSG00000221537-MIR548H1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548H1
DMDM Disease mutations100313830
Blocks (Seattle)MIR548H1
Human Protein Atlas [tissue]ENSG00000221537-MIR548H1 [tissue]
Protein Interaction databases
FunCoupENSG00000221537
BioGRIDMIR548H1
STRING (EMBL)MIR548H1
ZODIACMIR548H1
Ontologies - Pathways
Huge Navigator MIR548H1 [HugePedia]
snp3D : Map Gene to Disease100313830
BioCentury BCIQMIR548H1
ClinGenMIR548H1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100313830
Chemical/Pharm GKB GenePA164722831
Clinical trialMIR548H1
Miscellaneous
canSAR (ICR)MIR548H1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548H1
EVEXMIR548H1
GoPubMedMIR548H1
iHOPMIR548H1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:30:04 CET 2017

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