Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR548H3 (microRNA 548h-3)

Identity

Alias_namesMIRN548H3
Alias_symbol (synonym)hsa-mir-548h-3
Other aliasMIR548H-3
HGNC (Hugo) MIR548H3
LocusID (NCBI) 100302287
Atlas_Id 69829
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 13543529 and ends at 13543646 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANP32B (9q22.33) / MIR548H3 (6q16.1)MALAT1 (11q13.1) / MIR548H3 (6q16.1)MIR548H3 (6q16.1) / EXOC6B (2p13.2)
MIR548H3 (6q16.1) / NUP93 (16q13)MIR548H3 (6q16.1) / TCF12 (15q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548H3   35344
Cards
Entrez_Gene (NCBI)MIR548H3  100302287  microRNA 548h-3
AliasesMIR548H-3; MIRN548H3; hsa-mir-548h-3
GeneCards (Weizmann)MIR548H3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:13543529-13543646 [Contig_View]  MIR548H3 [Vega]
TCGA cBioPortalMIR548H3
AceView (NCBI)MIR548H3
Genatlas (Paris)MIR548H3
WikiGenes100302287
SOURCE (Princeton)MIR548H3
Genetics Home Reference (NIH)MIR548H3
miRBaseMIR548H3
dbDEMCMIR548H3
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548H3  -     chr17:13543529-13543646 -  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548H3  -     17p12   [Description]    (hg19-Feb_2009)
EnsemblMIR548H3 - 17p12 [CytoView hg19]  MIR548H3 - 17p12 [CytoView hg38]
Mapping of homologs : NCBIMIR548H3 [Mapview hg19]  MIR548H3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548H3
Gene ExpressionMIR548H3 [ NCBI-GEO ]   MIR548H3 [ EBI - ARRAY_EXPRESS ]   MIR548H3 [ SEEK ]   MIR548H3 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548H3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100302287
GTEX Portal (Tissue expression)MIR548H3
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548H3
DMDM Disease mutations100302287
Blocks (Seattle)MIR548H3
Protein Interaction databases
BioGRIDMIR548H3
STRING (EMBL)MIR548H3
ZODIACMIR548H3
Ontologies - Pathways
Huge Navigator MIR548H3 [HugePedia]
snp3D : Map Gene to Disease100302287
BioCentury BCIQMIR548H3
ClinGenMIR548H3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100302287
Chemical/Pharm GKB GenePA164722833
Clinical trialMIR548H3
Miscellaneous
canSAR (ICR)MIR548H3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548H3
EVEXMIR548H3
GoPubMedMIR548H3
iHOPMIR548H3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:29:39 CEST 2017

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