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MIR548H5 (microRNA 548h-5)

Identity

Alias_symbol (synonym)hsa-mir-548h-5
Other alias-
HGNC (Hugo) MIR548H5
LocusID (NCBI) 100616455
Atlas_Id 76575
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 131792172 and ends at 131792231 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548H5   41768
Cards
Entrez_Gene (NCBI)MIR548H5  100616455  microRNA 548h-5
Aliases
GeneCards (Weizmann)MIR548H5
Ensembl hg19 (Hinxton)ENSG00000266807 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266807 [Gene_View]  ENSG00000266807 [Sequence]  chr6:131792172-131792231 [Contig_View]  MIR548H5 [Vega]
ICGC DataPortalENSG00000266807
TCGA cBioPortalMIR548H5
AceView (NCBI)MIR548H5
Genatlas (Paris)MIR548H5
WikiGenes100616455
SOURCE (Princeton)MIR548H5
Genetics Home Reference (NIH)MIR548H5
miRBaseMIR548H5
dbDEMCMIR548H5
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548H5  -     chr6:131792172-131792231 +  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548H5  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblMIR548H5 - 6q23.2 [CytoView hg19]  MIR548H5 - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBIMIR548H5 [Mapview hg19]  MIR548H5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548H5
Alternative Splicing GalleryENSG00000266807
Gene ExpressionMIR548H5 [ NCBI-GEO ]   MIR548H5 [ EBI - ARRAY_EXPRESS ]   MIR548H5 [ SEEK ]   MIR548H5 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548H5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100616455
GTEX Portal (Tissue expression)MIR548H5
Human Protein AtlasENSG00000266807-MIR548H5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548H5
DMDM Disease mutations100616455
Blocks (Seattle)MIR548H5
Human Protein Atlas [tissue]ENSG00000266807-MIR548H5 [tissue]
Protein Interaction databases
FunCoupENSG00000266807
BioGRIDMIR548H5
STRING (EMBL)MIR548H5
ZODIACMIR548H5
Ontologies - Pathways
Huge Navigator MIR548H5 [HugePedia]
snp3D : Map Gene to Disease100616455
BioCentury BCIQMIR548H5
ClinGenMIR548H5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100616455
Clinical trialMIR548H5
Miscellaneous
canSAR (ICR)MIR548H5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548H5
EVEXMIR548H5
GoPubMedMIR548H5
iHOPMIR548H5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:16:08 CEST 2018

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