Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR548I2 (microRNA 548i-2)

Identity

Alias (NCBI)MIR548I-2
MIRN548I2
hsa-mir-548i-2
mir-548i-2
HGNC (Hugo) MIR548I2
HGNC Alias symbhsa-mir-548i-2
HGNC Previous nameMIRN548I2
LocusID (NCBI) 100302277
Atlas_Id 69832
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9556168 and ends at 9556316 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548I2   35353
Cards
Entrez_Gene (NCBI)MIR548I2  100302277  microRNA 548i-2
AliasesMIR548I-2; MIRN548I2; hsa-mir-548i-2; mir-548i-2
GeneCards (Weizmann)MIR548I2
Ensembl hg19 (Hinxton)ENSG00000221275 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221275 [Gene_View]  ENSG00000221275 [Sequence]  chr4:9556168-9556316 [Contig_View]  MIR548I2 [Vega]
ICGC DataPortalENSG00000221275
TCGA cBioPortalMIR548I2
AceView (NCBI)MIR548I2
Genatlas (Paris)MIR548I2
WikiGenes100302277
SOURCE (Princeton)MIR548I2
Genetics Home Reference (NIH)MIR548I2
miRBaseMIR548I2
dbDEMCMIR548I2
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548I2  -     chr4:9556168-9556316 -  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548I2  -     4p16.1   [Description]    (hg19-Feb_2009)
GoldenPathMIR548I2 - 4p16.1 [CytoView hg19]  MIR548I2 - 4p16.1 [CytoView hg38]
ImmunoBaseENSG00000221275
genome Data Viewer NCBIMIR548I2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)LM610170
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548I2
Alternative Splicing GalleryENSG00000221275
Gene ExpressionMIR548I2 [ NCBI-GEO ]   MIR548I2 [ EBI - ARRAY_EXPRESS ]   MIR548I2 [ SEEK ]   MIR548I2 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548I2 [ Firebrowse - Broad ]
GenevisibleExpression of MIR548I2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100302277
GTEX Portal (Tissue expression)MIR548I2
Human Protein AtlasENSG00000221275-MIR548I2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548I2
DMDM Disease mutations100302277
Blocks (Seattle)MIR548I2
Human Protein Atlas [tissue]ENSG00000221275-MIR548I2 [tissue]
Protein Interaction databases
FunCoupENSG00000221275
BioGRIDMIR548I2
STRING (EMBL)MIR548I2
ZODIACMIR548I2
Ontologies - Pathways
Huge Navigator MIR548I2 [HugePedia]
snp3D : Map Gene to Disease100302277
BioCentury BCIQMIR548I2
ClinGenMIR548I2
Clinical trials, drugs, therapy
Protein Interactions : CTD100302277
Pharm GKB GenePA164722836
Clinical trialMIR548I2
Miscellaneous
canSAR (ICR)MIR548I2 (select the gene name)
HarmonizomeMIR548I2
DataMed IndexMIR548I2
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548I2
EVEXMIR548I2
GoPubMedMIR548I2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:26:41 CEST 2020

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