Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIR548I4 (microRNA 548i-4)

Identity

Alias_namesMIRN548I4
Alias_symbol (synonym)hsa-mir-548i-4
Other aliasMIR548I-4
HGNC (Hugo) MIR548I4
LocusID (NCBI) 100302191
Atlas_Id 69834
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 84225752 and ends at 84225828 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548I4   35355
Cards
Entrez_Gene (NCBI)MIR548I4  100302191  microRNA 548i-4
AliasesMIR548I-4; MIRN548I4; hsa-mir-548i-4
GeneCards (Weizmann)MIR548I4
Ensembl hg19 (Hinxton)ENSG00000221494 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221494 [Gene_View]  chrX:84225752-84225828 [Contig_View]  MIR548I4 [Vega]
ICGC DataPortalENSG00000221494
TCGA cBioPortalMIR548I4
AceView (NCBI)MIR548I4
Genatlas (Paris)MIR548I4
WikiGenes100302191
SOURCE (Princeton)MIR548I4
Genetics Home Reference (NIH)MIR548I4
miRBaseMIR548I4
dbDEMCMIR548I4
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548I4  -     chrX:84225752-84225828 -  Xq21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548I4  -     Xq21.1   [Description]    (hg19-Feb_2009)
EnsemblMIR548I4 - Xq21.1 [CytoView hg19]  MIR548I4 - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBIMIR548I4 [Mapview hg19]  MIR548I4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548I4
Alternative Splicing GalleryENSG00000221494
Gene ExpressionMIR548I4 [ NCBI-GEO ]   MIR548I4 [ EBI - ARRAY_EXPRESS ]   MIR548I4 [ SEEK ]   MIR548I4 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548I4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100302191
GTEX Portal (Tissue expression)MIR548I4
Human Protein AtlasENSG00000221494-MIR548I4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548I4
DMDM Disease mutations100302191
Blocks (Seattle)MIR548I4
Human Protein Atlas [tissue]ENSG00000221494-MIR548I4 [tissue]
Protein Interaction databases
FunCoupENSG00000221494
BioGRIDMIR548I4
STRING (EMBL)MIR548I4
ZODIACMIR548I4
Ontologies - Pathways
Huge Navigator MIR548I4 [HugePedia]
snp3D : Map Gene to Disease100302191
BioCentury BCIQMIR548I4
ClinGenMIR548I4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100302191
Chemical/Pharm GKB GenePA164722838
Clinical trialMIR548I4
Miscellaneous
canSAR (ICR)MIR548I4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548I4
EVEXMIR548I4
GoPubMedMIR548I4
iHOPMIR548I4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:15:46 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.