Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MIR548L (microRNA 548l)

Identity

Alias_namesMIRN548L
Alias_symbol (synonym)hsa-mir-548l
Other alias
HGNC (Hugo) MIR548L
LocusID (NCBI) 100302275
Atlas_Id 55205
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 94466495 and ends at 94466580 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MIR548L   35292
Cards
Entrez_Gene (NCBI)MIR548L  100302275  microRNA 548l
AliasesMIRN548L; hsa-mir-548l
GeneCards (Weizmann)MIR548L
Ensembl hg19 (Hinxton)ENSG00000221230 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221230 [Gene_View]  ENSG00000221230 [Sequence]  chr11:94466495-94466580 [Contig_View]  MIR548L [Vega]
ICGC DataPortalENSG00000221230
TCGA cBioPortalMIR548L
AceView (NCBI)MIR548L
Genatlas (Paris)MIR548L
WikiGenes100302275
SOURCE (Princeton)MIR548L
Genetics Home Reference (NIH)MIR548L
miRBaseMIR548L
dbDEMCMIR548L
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548L  -     chr11:94466495-94466580 -  11q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548L  -     11q21   [Description]    (hg19-Feb_2009)
GoldenPathMIR548L - 11q21 [CytoView hg19]  MIR548L - 11q21 [CytoView hg38]
ImmunoBaseENSG00000221230
Mapping of homologs : NCBIMIR548L [Mapview hg19]  MIR548L [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548L
Alternative Splicing GalleryENSG00000221230
Gene ExpressionMIR548L [ NCBI-GEO ]   MIR548L [ EBI - ARRAY_EXPRESS ]   MIR548L [ SEEK ]   MIR548L [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100302275
GTEX Portal (Tissue expression)MIR548L
Human Protein AtlasENSG00000221230-MIR548L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548L
DMDM Disease mutations100302275
Blocks (Seattle)MIR548L
Human Protein Atlas [tissue]ENSG00000221230-MIR548L [tissue]
Protein Interaction databases
FunCoupENSG00000221230
BioGRIDMIR548L
STRING (EMBL)MIR548L
ZODIACMIR548L
Ontologies - Pathways
Huge Navigator MIR548L [HugePedia]
snp3D : Map Gene to Disease100302275
BioCentury BCIQMIR548L
ClinGenMIR548L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100302275
Chemical/Pharm GKB GenePA164722841
Clinical trialMIR548L
Miscellaneous
canSAR (ICR)MIR548L (select the gene name)
DataMed IndexMIR548L
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548L
EVEXMIR548L
GoPubMedMIR548L
iHOPMIR548L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 8 11:30:36 CEST 2019
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