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MIR548N (microRNA 548n)

Identity

Alias_namesMIRN548N
Alias_symbol (synonym)hsa-mir-548n
Other alias
HGNC (Hugo) MIR548N
LocusID (NCBI) 100302152
Atlas_Id 69837
Location 1p21.2  [Link to chromosome band 1p21]
Location_base_pair Starts at 99516984 and ends at 99712953 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADGRL2 (1p31.1) / MIR548N (2q31.2)CARM1 (19p13.2) / MIR548N (2q31.2)GTPBP6 (Xp22.33) / MIR548N (2q31.2)
MIR548N (2q31.2) / BBX (3q13.12)MIR548N (2q31.2) / EIF4G1 (3q27.1)MIR548N (2q31.2) / FAH (15q25.1)
MIR548N (2q31.2) / FAM98A (2p22.3)MIR548N (2q31.2) / FUNDC2 (Xq28)MIR548N (2q31.2) / GOT2 (16q21)
MIR548N (2q31.2) / HRC (19q13.33)MIR548N (2q31.2) / MIR548N (2q31.2)MIR548N (2q31.2) / MSI2 (17q22)
MIR548N (2q31.2) / ZEB1 (10p11.22)PPP1CB (2p23.2) / MIR548N (2q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548N   35330
Cards
Entrez_Gene (NCBI)MIR548N  100302152  microRNA 548n
AliasesMIRN548N; hsa-mir-548n
GeneCards (Weizmann)MIR548N
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:99516984-99712953 [Contig_View]  MIR548N [Vega]
TCGA cBioPortalMIR548N
AceView (NCBI)MIR548N
Genatlas (Paris)MIR548N
WikiGenes100302152
SOURCE (Princeton)MIR548N
Genetics Home Reference (NIH)MIR548N
miRBaseMIR548N
dbDEMCMIR548N
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548N  -     chr1:99516984-99712953 -  1p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548N  -     1p21.2   [Description]    (hg19-Feb_2009)
EnsemblMIR548N - 1p21.2 [CytoView hg19]  MIR548N - 1p21.2 [CytoView hg38]
Mapping of homologs : NCBIMIR548N [Mapview hg19]  MIR548N [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548N
Gene ExpressionMIR548N [ NCBI-GEO ]   MIR548N [ EBI - ARRAY_EXPRESS ]   MIR548N [ SEEK ]   MIR548N [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548N [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100302152
GTEX Portal (Tissue expression)MIR548N
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548N
DMDM Disease mutations100302152
Blocks (Seattle)MIR548N
Protein Interaction databases
BioGRIDMIR548N
STRING (EMBL)MIR548N
ZODIACMIR548N
Ontologies - Pathways
Huge Navigator MIR548N [HugePedia]
snp3D : Map Gene to Disease100302152
BioCentury BCIQMIR548N
ClinGenMIR548N
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100302152
Chemical/Pharm GKB GenePA164722843
Clinical trialMIR548N
Miscellaneous
canSAR (ICR)MIR548N (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548N
EVEXMIR548N
GoPubMedMIR548N
iHOPMIR548N
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:16:39 CET 2017

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