Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR548O2 (microRNA 548o-2)

Identity

Alias_symbol (synonym)hsa-mir-548o-2
Other alias-
HGNC (Hugo) MIR548O2
LocusID (NCBI) 100616190
Atlas_Id 69838
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 38516563 and ends at 38516632 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MIR548O2 (8p12) / C6orf106 (6p21.31)MIR548O2 (8p12) / GOLGA4 (3p22.2)MIR548O2 (8p12) / MIR548O2 (8p12)
MIR548O2 (8p12) / RPL36A-HNRNPH2 (Xq22.1)MIR548O2 (8p12) / TET3 (2p13.1)SEC63 (6q21) / MIR548O2 (8p12)
TSC22D1 (13q14.11) / MIR548O2 (8p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548O2   41882
Cards
Entrez_Gene (NCBI)MIR548O2  100616190  microRNA 548o-2
Aliases
GeneCards (Weizmann)MIR548O2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:38516563-38516632 [Contig_View]  MIR548O2 [Vega]
TCGA cBioPortalMIR548O2
AceView (NCBI)MIR548O2
Genatlas (Paris)MIR548O2
WikiGenes100616190
SOURCE (Princeton)MIR548O2
Genetics Home Reference (NIH)MIR548O2
miRBaseMIR548O2
dbDEMCMIR548O2
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548O2  -     chr20:38516563-38516632 +  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548O2  -     20q11.23   [Description]    (hg19-Feb_2009)
EnsemblMIR548O2 - 20q11.23 [CytoView hg19]  MIR548O2 - 20q11.23 [CytoView hg38]
Mapping of homologs : NCBIMIR548O2 [Mapview hg19]  MIR548O2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548O2
Gene ExpressionMIR548O2 [ NCBI-GEO ]   MIR548O2 [ EBI - ARRAY_EXPRESS ]   MIR548O2 [ SEEK ]   MIR548O2 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548O2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100616190
GTEX Portal (Tissue expression)MIR548O2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548O2
DMDM Disease mutations100616190
Blocks (Seattle)MIR548O2
Protein Interaction databases
BioGRIDMIR548O2
STRING (EMBL)MIR548O2
ZODIACMIR548O2
Ontologies - Pathways
Huge Navigator MIR548O2 [HugePedia]
snp3D : Map Gene to Disease100616190
BioCentury BCIQMIR548O2
ClinGenMIR548O2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100616190
Clinical trialMIR548O2
Miscellaneous
canSAR (ICR)MIR548O2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548O2
EVEXMIR548O2
GoPubMedMIR548O2
iHOPMIR548O2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:56 CET 2017

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