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MIR548U (microRNA 548u)

Identity

Alias_symbol (synonym)hsa-mir-548u
Other alias-
HGNC (Hugo) MIR548U
LocusID (NCBI) 100422884
Atlas_Id 77208
Location 6p11.2  [Link to chromosome band 6p11]
Location_base_pair Starts at 57390132 and ends at 57390212 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548U   38316
Cards
Entrez_Gene (NCBI)MIR548U  100422884  microRNA 548u
Aliases
GeneCards (Weizmann)MIR548U
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:57390132-57390212 [Contig_View]  MIR548U [Vega]
TCGA cBioPortalMIR548U
AceView (NCBI)MIR548U
Genatlas (Paris)MIR548U
WikiGenes100422884
SOURCE (Princeton)MIR548U
Genetics Home Reference (NIH)MIR548U
miRBaseMIR548U
dbDEMCMIR548U
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548U  -     chr6:57390132-57390212 +  6p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548U  -     6p11.2   [Description]    (hg19-Feb_2009)
EnsemblMIR548U - 6p11.2 [CytoView hg19]  MIR548U - 6p11.2 [CytoView hg38]
Mapping of homologs : NCBIMIR548U [Mapview hg19]  MIR548U [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548U
Gene ExpressionMIR548U [ NCBI-GEO ]   MIR548U [ EBI - ARRAY_EXPRESS ]   MIR548U [ SEEK ]   MIR548U [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548U [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100422884
GTEX Portal (Tissue expression)MIR548U
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548U
DMDM Disease mutations100422884
Blocks (Seattle)MIR548U
Protein Interaction databases
BioGRIDMIR548U
STRING (EMBL)MIR548U
ZODIACMIR548U
Ontologies - Pathways
Huge Navigator MIR548U [HugePedia]
snp3D : Map Gene to Disease100422884
BioCentury BCIQMIR548U
ClinGenMIR548U
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100422884
Chemical/Pharm GKB GenePA165618127
Clinical trialMIR548U
Miscellaneous
canSAR (ICR)MIR548U (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548U
EVEXMIR548U
GoPubMedMIR548U
iHOPMIR548U
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:16:11 CEST 2018

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