Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIR548X (microRNA 548x)

Identity

Alias_symbol (synonym)hsa-mir-548x
Other alias-
HGNC (Hugo) MIR548X
LocusID (NCBI) 100422920
Atlas_Id 69842
Location 21q21.1  [Link to chromosome band 21q21]
Location_base_pair Starts at 18686090 and ends at 18686164 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548X   38248
Cards
Entrez_Gene (NCBI)MIR548X  100422920  microRNA 548x
Aliases
GeneCards (Weizmann)MIR548X
Ensembl hg19 (Hinxton)ENSG00000265841 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000265841 [Gene_View]  chr21:18686090-18686164 [Contig_View]  MIR548X [Vega]
ICGC DataPortalENSG00000265841
TCGA cBioPortalMIR548X
AceView (NCBI)MIR548X
Genatlas (Paris)MIR548X
WikiGenes100422920
SOURCE (Princeton)MIR548X
Genetics Home Reference (NIH)MIR548X
miRBaseMIR548X
dbDEMCMIR548X
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548X  -     chr21:18686090-18686164 -  21q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548X  -     21q21.1   [Description]    (hg19-Feb_2009)
EnsemblMIR548X - 21q21.1 [CytoView hg19]  MIR548X - 21q21.1 [CytoView hg38]
Mapping of homologs : NCBIMIR548X [Mapview hg19]  MIR548X [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548X
Alternative Splicing GalleryENSG00000265841
Gene ExpressionMIR548X [ NCBI-GEO ]   MIR548X [ EBI - ARRAY_EXPRESS ]   MIR548X [ SEEK ]   MIR548X [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548X [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100422920
GTEX Portal (Tissue expression)MIR548X
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548X
DMDM Disease mutations100422920
Blocks (Seattle)MIR548X
Human Protein AtlasENSG00000265841
Protein Interaction databases
FunCoupENSG00000265841
BioGRIDMIR548X
STRING (EMBL)MIR548X
ZODIACMIR548X
Ontologies - Pathways
Huge Navigator MIR548X [HugePedia]
snp3D : Map Gene to Disease100422920
BioCentury BCIQMIR548X
ClinGenMIR548X
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100422920
Chemical/Pharm GKB GenePA165378434
Clinical trialMIR548X
Miscellaneous
canSAR (ICR)MIR548X (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548X
EVEXMIR548X
GoPubMedMIR548X
iHOPMIR548X
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:29:23 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.