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MIR548Y (microRNA 548y)

Identity

Alias_symbol (synonym)hsa-mir-548y
Other alias-
HGNC (Hugo) MIR548Y
LocusID (NCBI) 100500919
Atlas_Id 69843
Location 14q21.3  [Link to chromosome band 14q21]
Location_base_pair Starts at 47760995 and ends at 47761104 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548Y   38980
Cards
Entrez_Gene (NCBI)MIR548Y  100500919  microRNA 548y
Aliases
GeneCards (Weizmann)MIR548Y
Ensembl hg19 (Hinxton)ENSG00000263945 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000263945 [Gene_View]  chr14:47760995-47761104 [Contig_View]  MIR548Y [Vega]
ICGC DataPortalENSG00000263945
TCGA cBioPortalMIR548Y
AceView (NCBI)MIR548Y
Genatlas (Paris)MIR548Y
WikiGenes100500919
SOURCE (Princeton)MIR548Y
Genetics Home Reference (NIH)MIR548Y
miRBaseMIR548Y
dbDEMCMIR548Y
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548Y  -     chr14:47760995-47761104 -  14q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548Y  -     14q21.3   [Description]    (hg19-Feb_2009)
EnsemblMIR548Y - 14q21.3 [CytoView hg19]  MIR548Y - 14q21.3 [CytoView hg38]
Mapping of homologs : NCBIMIR548Y [Mapview hg19]  MIR548Y [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548Y
Alternative Splicing GalleryENSG00000263945
Gene ExpressionMIR548Y [ NCBI-GEO ]   MIR548Y [ EBI - ARRAY_EXPRESS ]   MIR548Y [ SEEK ]   MIR548Y [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548Y [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100500919
GTEX Portal (Tissue expression)MIR548Y
Human Protein AtlasENSG00000263945-MIR548Y [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548Y
DMDM Disease mutations100500919
Blocks (Seattle)MIR548Y
Human Protein Atlas [tissue]ENSG00000263945-MIR548Y [tissue]
Protein Interaction databases
FunCoupENSG00000263945
BioGRIDMIR548Y
STRING (EMBL)MIR548Y
ZODIACMIR548Y
Ontologies - Pathways
Huge Navigator MIR548Y [HugePedia]
snp3D : Map Gene to Disease100500919
BioCentury BCIQMIR548Y
ClinGenMIR548Y
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100500919
Clinical trialMIR548Y
Miscellaneous
canSAR (ICR)MIR548Y (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548Y
EVEXMIR548Y
GoPubMedMIR548Y
iHOPMIR548Y
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:30:04 CET 2017

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