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MIR549A (microRNA 549a)

Identity

Alias_namesMIRN549
MIR549
microRNA 549
Alias_symbol (synonym)hsa-mir-549
Other aliashsa-mir-549a
mir-549a
HGNC (Hugo) MIR549A
LocusID (NCBI) 693132
Atlas_Id 69845
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 80841978 and ends at 80842073 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR549A   32803
Cards
Entrez_Gene (NCBI)MIR549A  693132  microRNA 549a
AliasesMIR549; MIRN549; hsa-mir-549; hsa-mir-549a; 
mir-549a
GeneCards (Weizmann)MIR549A
Ensembl hg19 (Hinxton)ENSG00000208003 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000208003 [Gene_View]  chr15:80841978-80842073 [Contig_View]  MIR549A [Vega]
ICGC DataPortalENSG00000208003
TCGA cBioPortalMIR549A
AceView (NCBI)MIR549A
Genatlas (Paris)MIR549A
WikiGenes693132
SOURCE (Princeton)MIR549A
Genetics Home Reference (NIH)MIR549A
miRBaseMIR549A
dbDEMCMIR549A
Genomic and cartography
GoldenPath hg38 (UCSC)MIR549A  -     chr15:80841978-80842073 -  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR549A  -     15q25.1   [Description]    (hg19-Feb_2009)
EnsemblMIR549A - 15q25.1 [CytoView hg19]  MIR549A - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBIMIR549A [Mapview hg19]  MIR549A [Mapview hg38]
Gene and transcription
Genbank (Entrez)LM609598
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR549A
Alternative Splicing GalleryENSG00000208003
Gene ExpressionMIR549A [ NCBI-GEO ]   MIR549A [ EBI - ARRAY_EXPRESS ]   MIR549A [ SEEK ]   MIR549A [ MEM ]
Gene Expression Viewer (FireBrowse)MIR549A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)693132
GTEX Portal (Tissue expression)MIR549A
Human Protein AtlasENSG00000208003-MIR549A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR549A
DMDM Disease mutations693132
Blocks (Seattle)MIR549A
Human Protein Atlas [tissue]ENSG00000208003-MIR549A [tissue]
Protein Interaction databases
FunCoupENSG00000208003
BioGRIDMIR549A
STRING (EMBL)MIR549A
ZODIACMIR549A
Ontologies - Pathways
Huge Navigator MIR549A [HugePedia]
snp3D : Map Gene to Disease693132
BioCentury BCIQMIR549A
ClinGenMIR549A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD693132
Chemical/Pharm GKB GenePA164722846
Clinical trialMIR549A
Miscellaneous
canSAR (ICR)MIR549A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR549A
EVEXMIR549A
GoPubMedMIR549A
iHOPMIR549A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:15:49 CET 2017

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