Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MIR5579 (microRNA 5579)

Identity

Alias_symbol (synonym)hsa-mir-5579
Other alias-
HGNC (Hugo) MIR5579
LocusID (NCBI) 100847000
Atlas_Id 69858
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 79422169 and ends at 79422226 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MIR5579   43485
Cards
Entrez_Gene (NCBI)MIR5579  100847000  microRNA 5579
Aliases
GeneCards (Weizmann)MIR5579
Ensembl hg19 (Hinxton)ENSG00000266570 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266570 [Gene_View]  ENSG00000266570 [Sequence]  chr11:79422169-79422226 [Contig_View]  MIR5579 [Vega]
ICGC DataPortalENSG00000266570
TCGA cBioPortalMIR5579
AceView (NCBI)MIR5579
Genatlas (Paris)MIR5579
WikiGenes100847000
SOURCE (Princeton)MIR5579
Genetics Home Reference (NIH)MIR5579
miRBaseMIR5579
dbDEMCMIR5579
Genomic and cartography
GoldenPath hg38 (UCSC)MIR5579  -     chr11:79422169-79422226 -  11q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR5579  -     11q14.1   [Description]    (hg19-Feb_2009)
MIR5579 - 11q14.1 [CytoView hg19]  MIR5579 - 11q14.1 [CytoView hg38]
Mapping of homologs : NCBIMIR5579 [Mapview hg19]  MIR5579 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR5579
Alternative Splicing GalleryENSG00000266570
Gene ExpressionMIR5579 [ NCBI-GEO ]   MIR5579 [ EBI - ARRAY_EXPRESS ]   MIR5579 [ SEEK ]   MIR5579 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR5579 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100847000
GTEX Portal (Tissue expression)MIR5579
Human Protein AtlasENSG00000266570-MIR5579 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR5579
DMDM Disease mutations100847000
Blocks (Seattle)MIR5579
Human Protein Atlas [tissue]ENSG00000266570-MIR5579 [tissue]
Protein Interaction databases
FunCoupENSG00000266570
BioGRIDMIR5579
STRING (EMBL)MIR5579
ZODIACMIR5579
Ontologies - Pathways
Huge Navigator MIR5579 [HugePedia]
snp3D : Map Gene to Disease100847000
BioCentury BCIQMIR5579
ClinGenMIR5579
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100847000
Clinical trialMIR5579
Miscellaneous
canSAR (ICR)MIR5579 (select the gene name)
DataMed IndexMIR5579
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR5579
EVEXMIR5579
GoPubMedMIR5579
iHOPMIR5579
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 21 15:10:41 CET 2019
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