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MIR558 (microRNA 558)

Identity

Alias_namesMIRN558
Alias_symbol (synonym)hsa-mir-558
Other alias
HGNC (Hugo) MIR558
LocusID (NCBI) 693143
Atlas_Id 55568
Location 2p22.3  [Link to chromosome band 2p22]
Location_base_pair Starts at 32757220 and ends at 32757313 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR558   32814
Cards
Entrez_Gene (NCBI)MIR558  693143  microRNA 558
AliasesMIRN558; hsa-mir-558
GeneCards (Weizmann)MIR558
Ensembl hg19 (Hinxton)ENSG00000207653 [Gene_View]  chr2:32757220-32757313 [Contig_View]  MIR558 [Vega]
Ensembl hg38 (Hinxton)ENSG00000207653 [Gene_View]  chr2:32757220-32757313 [Contig_View]  MIR558 [Vega]
ICGC DataPortalENSG00000207653
TCGA cBioPortalMIR558
AceView (NCBI)MIR558
Genatlas (Paris)MIR558
WikiGenes693143
SOURCE (Princeton)MIR558
Genetics Home Reference (NIH)MIR558
miRBaseMIR558
dbDEMCMIR558
Genomic and cartography
GoldenPath hg19 (UCSC)MIR558  -     chr2:32757220-32757313 +  2p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MIR558  -     2p22.3   [Description]    (hg38-Dec_2013)
EnsemblMIR558 - 2p22.3 [CytoView hg19]  MIR558 - 2p22.3 [CytoView hg38]
Mapping of homologs : NCBIMIR558 [Mapview hg19]  MIR558 [Mapview hg38]
OMIM616473   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)MIR558
Alternative Splicing GalleryENSG00000207653
Gene ExpressionMIR558 [ NCBI-GEO ]   MIR558 [ EBI - ARRAY_EXPRESS ]   MIR558 [ SEEK ]   MIR558 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR558 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)693143
GTEX Portal (Tissue expression)MIR558
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR558
DMDM Disease mutations693143
Blocks (Seattle)MIR558
Human Protein AtlasENSG00000207653
Protein Interaction databases
FunCoupENSG00000207653
BioGRIDMIR558
STRING (EMBL)MIR558
ZODIACMIR558
Ontologies - Pathways
Huge Navigator MIR558 [HugePedia]
snp3D : Map Gene to Disease693143
BioCentury BCIQMIR558
ClinGenMIR558
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD693143
Chemical/Pharm GKB GenePA164722857
Clinical trialMIR558
Miscellaneous
canSAR (ICR)MIR558 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR558
EVEXMIR558
GoPubMedMIR558
iHOPMIR558
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:16:35 CET 2017

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