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MIR5580 (microRNA 5580)

Identity

Alias_symbol (synonym)hsa-mir-5580
Other alias-
HGNC (Hugo) MIR5580
LocusID (NCBI) 100847076
Atlas_Id 69860
Location 14q22.2  [Link to chromosome band 14q22]
Location_base_pair Starts at 53948427 and ends at 53948484 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR5580   43482
Cards
Entrez_Gene (NCBI)MIR5580  100847076  microRNA 5580
Aliases
GeneCards (Weizmann)MIR5580
Ensembl hg19 (Hinxton)ENSG00000266431 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266431 [Gene_View]  chr14:53948427-53948484 [Contig_View]  MIR5580 [Vega]
ICGC DataPortalENSG00000266431
TCGA cBioPortalMIR5580
AceView (NCBI)MIR5580
Genatlas (Paris)MIR5580
WikiGenes100847076
SOURCE (Princeton)MIR5580
Genetics Home Reference (NIH)MIR5580
miRBaseMIR5580
dbDEMCMIR5580
Genomic and cartography
GoldenPath hg38 (UCSC)MIR5580  -     chr14:53948427-53948484 -  14q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR5580  -     14q22.2   [Description]    (hg19-Feb_2009)
EnsemblMIR5580 - 14q22.2 [CytoView hg19]  MIR5580 - 14q22.2 [CytoView hg38]
Mapping of homologs : NCBIMIR5580 [Mapview hg19]  MIR5580 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR5580
Alternative Splicing GalleryENSG00000266431
Gene ExpressionMIR5580 [ NCBI-GEO ]   MIR5580 [ EBI - ARRAY_EXPRESS ]   MIR5580 [ SEEK ]   MIR5580 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR5580 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100847076
GTEX Portal (Tissue expression)MIR5580
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR5580
DMDM Disease mutations100847076
Blocks (Seattle)MIR5580
Human Protein AtlasENSG00000266431
Protein Interaction databases
FunCoupENSG00000266431
BioGRIDMIR5580
STRING (EMBL)MIR5580
ZODIACMIR5580
Ontologies - Pathways
Huge Navigator MIR5580 [HugePedia]
snp3D : Map Gene to Disease100847076
BioCentury BCIQMIR5580
ClinGenMIR5580
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100847076
Clinical trialMIR5580
Miscellaneous
canSAR (ICR)MIR5580 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR5580
EVEXMIR5580
GoPubMedMIR5580
iHOPMIR5580
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:29:26 CEST 2017

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