Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIR562 (microRNA 562)

Identity

Alias_namesMIRN562
Alias_symbol (synonym)hsa-mir-562
Other alias
HGNC (Hugo) MIR562
LocusID (NCBI) 693147
Atlas_Id 51282
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 232172653 and ends at 232172747 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR562   32818
Cards
Entrez_Gene (NCBI)MIR562  693147  microRNA 562
AliasesMIRN562; hsa-mir-562
GeneCards (Weizmann)MIR562
Ensembl hg19 (Hinxton)ENSG00000207626 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000207626 [Gene_View]  chr2:232172653-232172747 [Contig_View]  MIR562 [Vega]
ICGC DataPortalENSG00000207626
TCGA cBioPortalMIR562
AceView (NCBI)MIR562
Genatlas (Paris)MIR562
WikiGenes693147
SOURCE (Princeton)MIR562
Genetics Home Reference (NIH)MIR562
miRBaseMIR562
dbDEMCMIR562
Genomic and cartography
GoldenPath hg38 (UCSC)MIR562  -     chr2:232172653-232172747 +  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)  -     2q37.1   [Description]    (hg19-Feb_2009)
EnsemblMIR562 - 2q37.1 [CytoView hg19]  MIR562 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBIMIR562 [Mapview hg19]  MIR562 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR562
Alternative Splicing GalleryENSG00000207626
Gene ExpressionMIR562 [ NCBI-GEO ]   MIR562 [ EBI - ARRAY_EXPRESS ]   MIR562 [ SEEK ]   MIR562 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR562 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)693147
GTEX Portal (Tissue expression)MIR562
Human Protein AtlasENSG00000207626-MIR562 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR562
DMDM Disease mutations693147
Blocks (Seattle)MIR562
Human Protein Atlas [tissue]ENSG00000207626-MIR562 [tissue]
Protein Interaction databases
FunCoupENSG00000207626
BioGRIDMIR562
STRING (EMBL)MIR562
ZODIACMIR562
Ontologies - Pathways
Huge Navigator MIR562 [HugePedia]
snp3D : Map Gene to Disease693147
BioCentury BCIQMIR562
ClinGenMIR562
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD693147
Chemical/Pharm GKB GenePA164722860
Clinical trialMIR562
Miscellaneous
canSAR (ICR)MIR562 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR562
EVEXMIR562
GoPubMedMIR562
iHOPMIR562
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:23:56 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.