Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIR5680 (microRNA 5680)

Identity

Alias_symbol (synonym)hsa-mir-5680
Other alias-
HGNC (Hugo) MIR5680
LocusID (NCBI) 100847001
Atlas_Id 69874
Location 8q22.3  [Link to chromosome band 8q22]
Location_base_pair Starts at 103137660 and ends at 103137743 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR5680   43492
Cards
Entrez_Gene (NCBI)MIR5680  100847001  microRNA 5680
Aliases
GeneCards (Weizmann)MIR5680
Ensembl hg19 (Hinxton)ENSG00000266756 [Gene_View]  chr8:103137660-103137743 [Contig_View]  MIR5680 [Vega]
Ensembl hg38 (Hinxton)ENSG00000266756 [Gene_View]  chr8:103137660-103137743 [Contig_View]  MIR5680 [Vega]
ICGC DataPortalENSG00000266756
TCGA cBioPortalMIR5680
AceView (NCBI)MIR5680
Genatlas (Paris)MIR5680
WikiGenes100847001
SOURCE (Princeton)MIR5680
Genetics Home Reference (NIH)MIR5680
miRBaseMIR5680
dbDEMCMIR5680
Genomic and cartography
GoldenPath hg19 (UCSC)MIR5680  -     chr8:103137660-103137743 +  8q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MIR5680  -     8q22.3   [Description]    (hg38-Dec_2013)
EnsemblMIR5680 - 8q22.3 [CytoView hg19]  MIR5680 - 8q22.3 [CytoView hg38]
Mapping of homologs : NCBIMIR5680 [Mapview hg19]  MIR5680 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)MIR5680
Alternative Splicing GalleryENSG00000266756
Gene ExpressionMIR5680 [ NCBI-GEO ]   MIR5680 [ EBI - ARRAY_EXPRESS ]   MIR5680 [ SEEK ]   MIR5680 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR5680 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100847001
GTEX Portal (Tissue expression)MIR5680
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR5680
DMDM Disease mutations100847001
Blocks (Seattle)MIR5680
Human Protein AtlasENSG00000266756
Protein Interaction databases
FunCoupENSG00000266756
BioGRIDMIR5680
STRING (EMBL)MIR5680
ZODIACMIR5680
Ontologies - Pathways
Huge Navigator MIR5680 [HugePedia]
snp3D : Map Gene to Disease100847001
BioCentury BCIQMIR5680
ClinGenMIR5680
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100847001
Clinical trialMIR5680
Miscellaneous
canSAR (ICR)MIR5680 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR5680
EVEXMIR5680
GoPubMedMIR5680
iHOPMIR5680
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:31:41 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.