Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR5683 (microRNA 5683)

Identity

Alias (NCBI)-
HGNC (Hugo) MIR5683
HGNC Alias symbhsa-mir-5683
LocusID (NCBI) 100847034
Atlas_Id 77714
Location 6p25.1  [Link to chromosome band 6p25]
Location_base_pair Starts at 6169334 and ends at 6169409 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR5683   43453
Cards
Entrez_Gene (NCBI)MIR5683  100847034  microRNA 5683
Aliases
GeneCards (Weizmann)MIR5683
Ensembl hg19 (Hinxton)ENSG00000283616 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000283616 [Gene_View]  ENSG00000283616 [Sequence]  chr6:6169334-6169409 [Contig_View]  MIR5683 [Vega]
ICGC DataPortalENSG00000283616
TCGA cBioPortalMIR5683
AceView (NCBI)MIR5683
Genatlas (Paris)MIR5683
WikiGenes100847034
SOURCE (Princeton)MIR5683
Genetics Home Reference (NIH)MIR5683
miRBaseMIR5683
dbDEMCMIR5683
Genomic and cartography
GoldenPath hg38 (UCSC)MIR5683  -     chr6:6169334-6169409 +  6p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR5683  -     6p25.1   [Description]    (hg19-Feb_2009)
GoldenPathMIR5683 - 6p25.1 [CytoView hg19]  MIR5683 - 6p25.1 [CytoView hg38]
ImmunoBaseENSG00000283616
genome Data Viewer NCBIMIR5683 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR5683
Alternative Splicing GalleryENSG00000283616
Gene ExpressionMIR5683 [ NCBI-GEO ]   MIR5683 [ EBI - ARRAY_EXPRESS ]   MIR5683 [ SEEK ]   MIR5683 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR5683 [ Firebrowse - Broad ]
GenevisibleExpression of MIR5683 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100847034
GTEX Portal (Tissue expression)MIR5683
Human Protein AtlasENSG00000283616-MIR5683 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR5683
DMDM Disease mutations100847034
Blocks (Seattle)MIR5683
Human Protein Atlas [tissue]ENSG00000283616-MIR5683 [tissue]
Protein Interaction databases
FunCoupENSG00000283616
BioGRIDMIR5683
STRING (EMBL)MIR5683
ZODIACMIR5683
Ontologies - Pathways
Huge Navigator MIR5683 [HugePedia]
snp3D : Map Gene to Disease100847034
BioCentury BCIQMIR5683
ClinGenMIR5683
Clinical trials, drugs, therapy
Protein Interactions : CTD100847034
Clinical trialMIR5683
Miscellaneous
canSAR (ICR)MIR5683 (select the gene name)
HarmonizomeMIR5683
DataMed IndexMIR5683
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR5683
EVEXMIR5683
GoPubMedMIR5683
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Aug 22 19:26:48 CEST 2020

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