Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIR5683 (microRNA 5683)

Identity

Alias_symbol (synonym)hsa-mir-5683
Other alias-
HGNC (Hugo) MIR5683
LocusID (NCBI) 100847034
Atlas_Id 77714
Location 6p25.1  [Link to chromosome band 6p25]
Location_base_pair Starts at 6169334 and ends at 6169409 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR5683   43453
Cards
Entrez_Gene (NCBI)MIR5683  100847034  microRNA 5683
Aliases
GeneCards (Weizmann)MIR5683
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:6169334-6169409 [Contig_View]  MIR5683 [Vega]
TCGA cBioPortalMIR5683
AceView (NCBI)MIR5683
Genatlas (Paris)MIR5683
WikiGenes100847034
SOURCE (Princeton)MIR5683
Genetics Home Reference (NIH)MIR5683
miRBaseMIR5683
dbDEMCMIR5683
Genomic and cartography
GoldenPath hg38 (UCSC)MIR5683  -     chr6:6169334-6169409 +  6p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR5683  -     6p25.1   [Description]    (hg19-Feb_2009)
EnsemblMIR5683 - 6p25.1 [CytoView hg19]  MIR5683 - 6p25.1 [CytoView hg38]
Mapping of homologs : NCBIMIR5683 [Mapview hg19]  MIR5683 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR5683
Gene ExpressionMIR5683 [ NCBI-GEO ]   MIR5683 [ EBI - ARRAY_EXPRESS ]   MIR5683 [ SEEK ]   MIR5683 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR5683 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100847034
GTEX Portal (Tissue expression)MIR5683
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR5683
DMDM Disease mutations100847034
Blocks (Seattle)MIR5683
Protein Interaction databases
BioGRIDMIR5683
STRING (EMBL)MIR5683
ZODIACMIR5683
Ontologies - Pathways
Huge Navigator MIR5683 [HugePedia]
snp3D : Map Gene to Disease100847034
BioCentury BCIQMIR5683
ClinGenMIR5683
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100847034
Clinical trialMIR5683
Miscellaneous
canSAR (ICR)MIR5683 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR5683
EVEXMIR5683
GoPubMedMIR5683
iHOPMIR5683
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:16:21 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.