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MIR6080 (microRNA 6080)

Identity

Alias_symbol (synonym)hsa-mir-6080
Other alias
HGNC (Hugo) MIR6080
LocusID (NCBI) 102464831
Atlas_Id 69933
Location 17q24.1  [Link to chromosome band 17q24]
Location_base_pair Starts at 64780759 and ends at 64780824 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR6080   50142
Cards
Entrez_Gene (NCBI)MIR6080  102464831  microRNA 6080
Aliaseshsa-mir-6080
GeneCards (Weizmann)MIR6080
Ensembl hg19 (Hinxton)ENSG00000278581 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278581 [Gene_View]  chr17:64780759-64780824 [Contig_View]  MIR6080 [Vega]
ICGC DataPortalENSG00000278581
TCGA cBioPortalMIR6080
AceView (NCBI)MIR6080
Genatlas (Paris)MIR6080
WikiGenes102464831
SOURCE (Princeton)MIR6080
Genetics Home Reference (NIH)MIR6080
miRBaseMIR6080
dbDEMCMIR6080
Genomic and cartography
GoldenPath hg38 (UCSC)MIR6080  -     chr17:64780759-64780824 +  17q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR6080  -     17q24.1   [Description]    (hg19-Feb_2009)
EnsemblMIR6080 - 17q24.1 [CytoView hg19]  MIR6080 - 17q24.1 [CytoView hg38]
Mapping of homologs : NCBIMIR6080 [Mapview hg19]  MIR6080 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR6080
Alternative Splicing GalleryENSG00000278581
Gene ExpressionMIR6080 [ NCBI-GEO ]   MIR6080 [ EBI - ARRAY_EXPRESS ]   MIR6080 [ SEEK ]   MIR6080 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR6080 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102464831
GTEX Portal (Tissue expression)MIR6080
Human Protein AtlasENSG00000278581-MIR6080 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR6080
DMDM Disease mutations102464831
Blocks (Seattle)MIR6080
Human Protein Atlas [tissue]ENSG00000278581-MIR6080 [tissue]
Protein Interaction databases
FunCoupENSG00000278581
BioGRIDMIR6080
STRING (EMBL)MIR6080
ZODIACMIR6080
Ontologies - Pathways
Huge Navigator MIR6080 [HugePedia]
snp3D : Map Gene to Disease102464831
BioCentury BCIQMIR6080
ClinGenMIR6080
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102464831
Clinical trialMIR6080
Miscellaneous
canSAR (ICR)MIR6080 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR6080
EVEXMIR6080
GoPubMedMIR6080
iHOPMIR6080
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:16:07 CET 2017

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