Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIR643 (microRNA 643)

Identity

Other aliasMIRN643
hsa-mir-643
mir-643
HGNC (Hugo) MIR643
LocusID (NCBI) 693228
Atlas_Id 57475
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52281797 and ends at 52281890 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR643   32899
Cards
Entrez_Gene (NCBI)MIR643  693228  microRNA 643
AliasesMIRN643; hsa-mir-643; mir-643
GeneCards (Weizmann)MIR643
Ensembl hg19 (Hinxton)ENSG00000208002 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000208002 [Gene_View]  ENSG00000208002 [Sequence]  chr19:52281797-52281890 [Contig_View]  MIR643 [Vega]
ICGC DataPortalENSG00000208002
TCGA cBioPortalMIR643
AceView (NCBI)MIR643
Genatlas (Paris)MIR643
WikiGenes693228
SOURCE (Princeton)MIR643
Genetics Home Reference (NIH)MIR643
miRBaseMIR643
dbDEMCMIR643
Genomic and cartography
GoldenPath hg38 (UCSC)MIR643  -     chr19:52281797-52281890 +  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR643  -     19q13.41   [Description]    (hg19-Feb_2009)
GoldenPathMIR643 - 19q13.41 [CytoView hg19]  MIR643 - 19q13.41 [CytoView hg38]
ImmunoBaseENSG00000208002
Mapping of homologs : NCBIMIR643 [Mapview hg19]  MIR643 [Mapview hg38]
Gene and transcription
Genbank (Entrez)LM609586
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR643
Alternative Splicing GalleryENSG00000208002
Gene ExpressionMIR643 [ NCBI-GEO ]   MIR643 [ EBI - ARRAY_EXPRESS ]   MIR643 [ SEEK ]   MIR643 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR643 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)693228
GTEX Portal (Tissue expression)MIR643
Human Protein AtlasENSG00000208002-MIR643 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR643
DMDM Disease mutations693228
Blocks (Seattle)MIR643
Human Protein Atlas [tissue]ENSG00000208002-MIR643 [tissue]
Protein Interaction databases
FunCoupENSG00000208002
BioGRIDMIR643
STRING (EMBL)MIR643
ZODIACMIR643
Ontologies - Pathways
Huge Navigator MIR643 [HugePedia]
snp3D : Map Gene to Disease693228
BioCentury BCIQMIR643
ClinGenMIR643
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD693228
Chemical/Pharm GKB GenePA164722939
Clinical trialMIR643
Miscellaneous
canSAR (ICR)MIR643 (select the gene name)
DataMed IndexMIR643
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR643
EVEXMIR643
GoPubMedMIR643
iHOPMIR643
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 12 15:44:55 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.