Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIR6780A (microRNA 6780a)

Identity

Alias_symbol (synonym)hsa-mir-6780a
Other alias
HGNC (Hugo) MIR6780A
LocusID (NCBI) 102466195
Atlas_Id 70080
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 42708084 and ends at 42708151 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR6780A   50069
Cards
Entrez_Gene (NCBI)MIR6780A  102466195  microRNA 6780a
Aliaseshsa-mir-6780a
GeneCards (Weizmann)MIR6780A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:42708084-42708151 [Contig_View]  MIR6780A [Vega]
TCGA cBioPortalMIR6780A
AceView (NCBI)MIR6780A
Genatlas (Paris)MIR6780A
WikiGenes102466195
SOURCE (Princeton)MIR6780A
Genetics Home Reference (NIH)MIR6780A
miRBaseMIR6780A
dbDEMCMIR6780A
Genomic and cartography
GoldenPath hg38 (UCSC)MIR6780A  -     chr17:42708084-42708151 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR6780A  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblMIR6780A - 17q21.2 [CytoView hg19]  MIR6780A - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIMIR6780A [Mapview hg19]  MIR6780A [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR6780A
Gene ExpressionMIR6780A [ NCBI-GEO ]   MIR6780A [ EBI - ARRAY_EXPRESS ]   MIR6780A [ SEEK ]   MIR6780A [ MEM ]
Gene Expression Viewer (FireBrowse)MIR6780A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102466195
GTEX Portal (Tissue expression)MIR6780A
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR6780A
DMDM Disease mutations102466195
Blocks (Seattle)MIR6780A
Protein Interaction databases
BioGRIDMIR6780A
STRING (EMBL)MIR6780A
ZODIACMIR6780A
Ontologies - Pathways
Huge Navigator MIR6780A [HugePedia]
snp3D : Map Gene to Disease102466195
BioCentury BCIQMIR6780A
ClinGenMIR6780A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102466195
Clinical trialMIR6780A
Miscellaneous
canSAR (ICR)MIR6780A (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR6780A
EVEXMIR6780A
GoPubMedMIR6780A
iHOPMIR6780A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:36:15 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.