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MIR7-3HG (MIR7-3 host gene)

Identity

Other aliasC19orf30
Huh7
LINC00306
NCRNA00306
PGSF1
uc002mbe.2
HGNC (Hugo) MIR7-3HG
LocusID (NCBI) 284424
Atlas_Id 56874
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4769140 and ends at 4772519 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR7-3HG   30049
Cards
Entrez_Gene (NCBI)MIR7-3HG  284424  MIR7-3 host gene
AliasesC19orf30; Huh7; LINC00306; NCRNA00306; 
PGSF1; uc002mbe.2
GeneCards (Weizmann)MIR7-3HG
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:4769140-4772519 [Contig_View]  MIR7-3HG [Vega]
TCGA cBioPortalMIR7-3HG
AceView (NCBI)MIR7-3HG
Genatlas (Paris)MIR7-3HG
WikiGenes284424
SOURCE (Princeton)MIR7-3HG
Genetics Home Reference (NIH)MIR7-3HG
miRBaseMIR7-3HG
dbDEMCMIR7-3HG
Genomic and cartography
GoldenPath hg38 (UCSC)MIR7-3HG  -     chr19:4769140-4772519 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR7-3HG  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblMIR7-3HG - 19p13.3 [CytoView hg19]  MIR7-3HG - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIMIR7-3HG [Mapview hg19]  MIR7-3HG [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB058892 AB058893 BC090884 BC117294 BC117296
RefSeq transcript (Entrez)NM_174947
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR7-3HG
Cluster EST : UnigeneHs.326728 [ NCBI ]
CGAP (NCI)Hs.326728
Gene ExpressionMIR7-3HG [ NCBI-GEO ]   MIR7-3HG [ EBI - ARRAY_EXPRESS ]   MIR7-3HG [ SEEK ]   MIR7-3HG [ MEM ]
Gene Expression Viewer (FireBrowse)MIR7-3HG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284424
GTEX Portal (Tissue expression)MIR7-3HG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6C7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6C7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6C7
Splice isoforms : SwissVarQ8N6C7
PhosPhoSitePlusQ8N6C7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR7-3HG
DMDM Disease mutations284424
Blocks (Seattle)MIR7-3HG
SuperfamilyQ8N6C7
Peptide AtlasQ8N6C7
IPIIPI00166987   IPI00166986   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6C7
IntAct (EBI)Q8N6C7
BioGRIDMIR7-3HG
STRING (EMBL)MIR7-3HG
ZODIACMIR7-3HG
Ontologies - Pathways
QuickGOQ8N6C7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMIR7-3HG
Atlas of Cancer Signalling NetworkMIR7-3HG
Wikipedia pathwaysMIR7-3HG
Orthology - Evolution
OrthoDB284424
Phylogenetic Trees/Animal Genes : TreeFamMIR7-3HG
HOVERGENQ8N6C7
HOGENOMQ8N6C7
Homologs : HomoloGeneMIR7-3HG
Homology/Alignments : Family Browser (UCSC)MIR7-3HG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMIR7-3HG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MIR7-3HG
dbVarMIR7-3HG
ClinVarMIR7-3HG
1000_GenomesMIR7-3HG 
Exome Variant ServerMIR7-3HG
ExAC (Exome Aggregation Consortium)MIR7-3HG (select the gene name)
Genetic variants : HAPMAP284424
Genomic Variants (DGV)MIR7-3HG [DGVbeta]
DECIPHERMIR7-3HG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMIR7-3HG 
Mutations
ICGC Data PortalMIR7-3HG 
TCGA Data PortalMIR7-3HG 
Broad Tumor PortalMIR7-3HG
OASIS PortalMIR7-3HG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMIR7-3HG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMIR7-3HG
BioMutasearch MIR7-3HG
DgiDB (Drug Gene Interaction Database)MIR7-3HG
DoCM (Curated mutations)MIR7-3HG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MIR7-3HG (select a term)
intoGenMIR7-3HG
Cancer3DMIR7-3HG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMIR7-3HG
Genetic Testing Registry MIR7-3HG
NextProtQ8N6C7 [Medical]
TSGene284424
GENETestsMIR7-3HG
Target ValidationMIR7-3HG
Huge Navigator MIR7-3HG [HugePedia]
snp3D : Map Gene to Disease284424
BioCentury BCIQMIR7-3HG
ClinGenMIR7-3HG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284424
Chemical/Pharm GKB GenePA134866457
Clinical trialMIR7-3HG
Miscellaneous
canSAR (ICR)MIR7-3HG (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR7-3HG
EVEXMIR7-3HG
GoPubMedMIR7-3HG
iHOPMIR7-3HG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:00:20 CEST 2017

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