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MIR7-3HG (MIR7-3 host gene)

Identity

Alias (NCBI)C19orf30
Huh7
LINC00306
NCRNA00306
PGSF1
uc002mbe.2
HGNC (Hugo) MIR7-3HG
HGNC Alias symbPGSF1
PGSF1a
PGSF1b
Huh7
uc002mbe.2
HGNC Alias namepituitary gland specific factor 1a
 pituitary gland specific factor 1b
HGNC Previous nameC19orf30
 NCRNA00306
 LINC00306
HGNC Previous namechromosome 19 open reading frame 30
 non-protein coding RNA 306
 long intergenic non-protein coding RNA 306
 MIR7-3 host gene (non-protein coding)
LocusID (NCBI) 284424
Atlas_Id 56874
Location 19p13.3  [Link to chromosome band 19p13]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR7-3HG   30049
Cards
Entrez_Gene (NCBI)MIR7-3HG  284424  MIR7-3 host gene
AliasesC19orf30; Huh7; LINC00306; NCRNA00306; 
PGSF1; uc002mbe.2
GeneCards (Weizmann)MIR7-3HG
Ensembl hg19 (Hinxton)ENSG00000176840 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176840 [Gene_View]  ENSG00000176840 [Sequence]  - [Contig_View]  MIR7-3HG [Vega]
ICGC DataPortalENSG00000176840
TCGA cBioPortalMIR7-3HG
AceView (NCBI)MIR7-3HG
Genatlas (Paris)MIR7-3HG
WikiGenes284424
SOURCE (Princeton)MIR7-3HG
Genetics Home Reference (NIH)MIR7-3HG
miRBaseMIR7-3HG
dbDEMCMIR7-3HG
Genomic and cartography
GoldenPath hg38 (UCSC)MIR7-3HG  -  
GoldenPath hg19 (UCSC)MIR7-3HG  -  
GoldenPathMIR7-3HG - [CytoView hg19]  MIR7-3HG - [CytoView hg38]
ImmunoBaseENSG00000176840
genome Data Viewer NCBIMIR7-3HG [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB058892 AB058893 BC090884 BC117294 BC117296
RefSeq transcript (Entrez)NM_174947
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR7-3HG
Alternative Splicing GalleryENSG00000176840
Gene ExpressionMIR7-3HG [ NCBI-GEO ]   MIR7-3HG [ EBI - ARRAY_EXPRESS ]   MIR7-3HG [ SEEK ]   MIR7-3HG [ MEM ]
Gene Expression Viewer (FireBrowse)MIR7-3HG [ Firebrowse - Broad ]
GenevisibleExpression of MIR7-3HG in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284424
GTEX Portal (Tissue expression)MIR7-3HG
Human Protein AtlasENSG00000176840-MIR7-3HG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6C7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6C7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6C7
Splice isoforms : SwissVarQ8N6C7
PhosPhoSitePlusQ8N6C7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR7-3HG
DMDM Disease mutations284424
Blocks (Seattle)MIR7-3HG
SuperfamilyQ8N6C7
Human Protein Atlas [tissue]ENSG00000176840-MIR7-3HG [tissue]
Peptide AtlasQ8N6C7
IPIIPI00166987   IPI00166986   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6C7
IntAct (EBI)Q8N6C7
FunCoupENSG00000176840
BioGRIDMIR7-3HG
STRING (EMBL)MIR7-3HG
ZODIACMIR7-3HG
Ontologies - Pathways
QuickGOQ8N6C7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMIR7-3HG
Atlas of Cancer Signalling NetworkMIR7-3HG
Wikipedia pathwaysMIR7-3HG
Orthology - Evolution
OrthoDB284424
GeneTree (enSembl)ENSG00000176840
Phylogenetic Trees/Animal Genes : TreeFamMIR7-3HG
HOGENOMQ8N6C7
Homologs : HomoloGeneMIR7-3HG
Homology/Alignments : Family Browser (UCSC)MIR7-3HG
Gene fusions - Rearrangements
Fusion : QuiverMIR7-3HG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMIR7-3HG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MIR7-3HG
dbVarMIR7-3HG
ClinVarMIR7-3HG
1000_GenomesMIR7-3HG 
Exome Variant ServerMIR7-3HG
GNOMAD BrowserENSG00000176840
Varsome BrowserMIR7-3HG
Genetic variants : HAPMAP284424
Genomic Variants (DGV)MIR7-3HG [DGVbeta]
DECIPHERMIR7-3HG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMIR7-3HG 
Mutations
ICGC Data PortalMIR7-3HG 
TCGA Data PortalMIR7-3HG 
Broad Tumor PortalMIR7-3HG
OASIS PortalMIR7-3HG [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMIR7-3HG
BioMutasearch MIR7-3HG
DgiDB (Drug Gene Interaction Database)MIR7-3HG
DoCM (Curated mutations)MIR7-3HG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MIR7-3HG (select a term)
intoGenMIR7-3HG
Cancer3DMIR7-3HG(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMIR7-3HG
MedgenMIR7-3HG
Genetic Testing Registry MIR7-3HG
NextProtQ8N6C7 [Medical]
TSGene284424
GENETestsMIR7-3HG
Target ValidationMIR7-3HG
Huge Navigator MIR7-3HG [HugePedia]
snp3D : Map Gene to Disease284424
BioCentury BCIQMIR7-3HG
ClinGenMIR7-3HG
Clinical trials, drugs, therapy
Protein Interactions : CTD284424
Pharm GKB GenePA134866457
Clinical trialMIR7-3HG
Miscellaneous
canSAR (ICR)MIR7-3HG (select the gene name)
HarmonizomeMIR7-3HG
DataMed IndexMIR7-3HG
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR7-3HG
EVEXMIR7-3HG
GoPubMedMIR7-3HG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 15:25:07 CEST 2020

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