Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIS18A (MIS18 kinetochore protein A)

Identity

Other aliasB28
C21orf45
C21orf46
FASP1
MIS18alpha
hMis18alpha
HGNC (Hugo) MIS18A
LocusID (NCBI) 54069
Atlas_Id 57034
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 32268219 and ends at 32279065 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MIS18A (21q22.11) / CYC1 (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIS18A   1286
Cards
Entrez_Gene (NCBI)MIS18A  54069  MIS18 kinetochore protein A
AliasesB28; C21orf45; C21orf46; FASP1; 
MIS18alpha; hMis18alpha
GeneCards (Weizmann)MIS18A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:32268219-32279065 [Contig_View]  MIS18A [Vega]
TCGA cBioPortalMIS18A
AceView (NCBI)MIS18A
Genatlas (Paris)MIS18A
WikiGenes54069
SOURCE (Princeton)MIS18A
Genetics Home Reference (NIH)MIS18A
Genomic and cartography
GoldenPath hg38 (UCSC)MIS18A  -     chr21:32268219-32279065 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIS18A  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblMIS18A - 21q22.11 [CytoView hg19]  MIS18A - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIMIS18A [Mapview hg19]  MIS18A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF231921 AF387845 AK075281 AK312073 AW962893
RefSeq transcript (Entrez)NM_018944
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIS18A
Cluster EST : UnigeneHs.190518 [ NCBI ]
CGAP (NCI)Hs.190518
Gene ExpressionMIS18A [ NCBI-GEO ]   MIS18A [ EBI - ARRAY_EXPRESS ]   MIS18A [ SEEK ]   MIS18A [ MEM ]
Gene Expression Viewer (FireBrowse)MIS18A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54069
GTEX Portal (Tissue expression)MIS18A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYP9
Splice isoforms : SwissVarQ9NYP9
PhosPhoSitePlusQ9NYP9
Domaine pattern : Prosite (Expaxy)MIS18 (PS51793)   
Domains : Interpro (EBI)Yippee/Mis18/Cereblon   
Domain families : Pfam (Sanger)Yippee-Mis18 (PF03226)   
Domain families : Pfam (NCBI)pfam03226   
Conserved Domain (NCBI)MIS18A
DMDM Disease mutations54069
Blocks (Seattle)MIS18A
SuperfamilyQ9NYP9
Peptide AtlasQ9NYP9
IPIIPI00021095   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYP9
IntAct (EBI)Q9NYP9
BioGRIDMIS18A
STRING (EMBL)MIS18A
ZODIACMIS18A
Ontologies - Pathways
QuickGOQ9NYP9
Ontology : AmiGOchromosome, centromeric region  chromatin  molecular_function  protein binding  nucleus  nucleus  nucleoplasm  cytosol  cell cycle  chromosome segregation  biological_process  CENP-A containing nucleosome assembly  CENP-A containing nucleosome assembly  regulation of DNA methylation  metal ion binding  cell division  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIchromosome, centromeric region  chromatin  molecular_function  protein binding  nucleus  nucleus  nucleoplasm  cytosol  cell cycle  chromosome segregation  biological_process  CENP-A containing nucleosome assembly  CENP-A containing nucleosome assembly  regulation of DNA methylation  metal ion binding  cell division  positive regulation of protein targeting to mitochondrion  
NDEx NetworkMIS18A
Atlas of Cancer Signalling NetworkMIS18A
Wikipedia pathwaysMIS18A
Orthology - Evolution
OrthoDB54069
Phylogenetic Trees/Animal Genes : TreeFamMIS18A
HOVERGENQ9NYP9
HOGENOMQ9NYP9
Homologs : HomoloGeneMIS18A
Homology/Alignments : Family Browser (UCSC)MIS18A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMIS18A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MIS18A
dbVarMIS18A
ClinVarMIS18A
1000_GenomesMIS18A 
Exome Variant ServerMIS18A
ExAC (Exome Aggregation Consortium)MIS18A (select the gene name)
Genetic variants : HAPMAP54069
Genomic Variants (DGV)MIS18A [DGVbeta]
DECIPHERMIS18A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMIS18A 
Mutations
ICGC Data PortalMIS18A 
TCGA Data PortalMIS18A 
Broad Tumor PortalMIS18A
OASIS PortalMIS18A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMIS18A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMIS18A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MIS18A
DgiDB (Drug Gene Interaction Database)MIS18A
DoCM (Curated mutations)MIS18A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MIS18A (select a term)
intoGenMIS18A
Cancer3DMIS18A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMIS18A
Genetic Testing Registry MIS18A
NextProtQ9NYP9 [Medical]
TSGene54069
GENETestsMIS18A
Target ValidationMIS18A
Huge Navigator MIS18A [HugePedia]
snp3D : Map Gene to Disease54069
BioCentury BCIQMIS18A
ClinGenMIS18A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54069
Chemical/Pharm GKB GenePA25840
Clinical trialMIS18A
Miscellaneous
canSAR (ICR)MIS18A (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIS18A
EVEXMIS18A
GoPubMedMIS18A
iHOPMIS18A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 14:00:27 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.