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MIS18BP1 (MIS18 binding protein 1)

Identity

Alias_namesC14orf106
chromosome 14 open reading frame 106
Alias_symbol (synonym)M18BP1
FLJ11186
KIAA1903
KNL2
Other aliasHSA242977
HGNC (Hugo) MIS18BP1
LocusID (NCBI) 55320
Atlas_Id 70324
Location 14q21.2  [Link to chromosome band 14q21]
Location_base_pair Starts at 45203190 and ends at 45253402 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MIS18BP1 (14q21.2) / MIS18BP1 (14q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIS18BP1   20190
Cards
Entrez_Gene (NCBI)MIS18BP1  55320  MIS18 binding protein 1
AliasesC14orf106; HSA242977; KNL2; M18BP1
GeneCards (Weizmann)MIS18BP1
Ensembl hg19 (Hinxton)ENSG00000129534 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129534 [Gene_View]  chr14:45203190-45253402 [Contig_View]  MIS18BP1 [Vega]
ICGC DataPortalENSG00000129534
TCGA cBioPortalMIS18BP1
AceView (NCBI)MIS18BP1
Genatlas (Paris)MIS18BP1
WikiGenes55320
SOURCE (Princeton)MIS18BP1
Genetics Home Reference (NIH)MIS18BP1
Genomic and cartography
GoldenPath hg38 (UCSC)MIS18BP1  -     chr14:45203190-45253402 -  14q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIS18BP1  -     14q21.2   [Description]    (hg19-Feb_2009)
EnsemblMIS18BP1 - 14q21.2 [CytoView hg19]  MIS18BP1 - 14q21.2 [CytoView hg38]
Mapping of homologs : NCBIMIS18BP1 [Mapview hg19]  MIS18BP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB067490 AJ242977 AK002048 AW971491 BC051885
RefSeq transcript (Entrez)NM_018353
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIS18BP1
Cluster EST : UnigeneHs.732769 [ NCBI ]
CGAP (NCI)Hs.732769
Alternative Splicing GalleryENSG00000129534
Gene ExpressionMIS18BP1 [ NCBI-GEO ]   MIS18BP1 [ EBI - ARRAY_EXPRESS ]   MIS18BP1 [ SEEK ]   MIS18BP1 [ MEM ]
Gene Expression Viewer (FireBrowse)MIS18BP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55320
GTEX Portal (Tissue expression)MIS18BP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P0N0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P0N0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P0N0
Splice isoforms : SwissVarQ6P0N0
PhosPhoSitePlusQ6P0N0
Domaine pattern : Prosite (Expaxy)SANT (PS51293)   
Domains : Interpro (EBI)Homeobox-like    SANT/Myb    SANT_dom    SANTA   
Domain families : Pfam (Sanger)Myb_DNA-binding (PF00249)    SANTA (PF09133)   
Domain families : Pfam (NCBI)pfam00249    pfam09133   
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)MIS18BP1
DMDM Disease mutations55320
Blocks (Seattle)MIS18BP1
PDB (SRS)1WGX   
PDB (PDBSum)1WGX   
PDB (IMB)1WGX   
PDB (RSDB)1WGX   
Structural Biology KnowledgeBase1WGX   
SCOP (Structural Classification of Proteins)1WGX   
CATH (Classification of proteins structures)1WGX   
SuperfamilyQ6P0N0
Human Protein AtlasENSG00000129534
Peptide AtlasQ6P0N0
HPRD12629
IPIIPI00104907   IPI01026084   IPI00385830   IPI00877653   IPI00878122   
Protein Interaction databases
DIP (DOE-UCLA)Q6P0N0
IntAct (EBI)Q6P0N0
FunCoupENSG00000129534
BioGRIDMIS18BP1
STRING (EMBL)MIS18BP1
ZODIACMIS18BP1
Ontologies - Pathways
QuickGOQ6P0N0
Ontology : AmiGOcondensed nuclear chromosome kinetochore  DNA binding  protein binding  nucleoplasm  cell cycle  CENP-A containing nucleosome assembly  cell division  
Ontology : EGO-EBIcondensed nuclear chromosome kinetochore  DNA binding  protein binding  nucleoplasm  cell cycle  CENP-A containing nucleosome assembly  cell division  
NDEx NetworkMIS18BP1
Atlas of Cancer Signalling NetworkMIS18BP1
Wikipedia pathwaysMIS18BP1
Orthology - Evolution
OrthoDB55320
GeneTree (enSembl)ENSG00000129534
Phylogenetic Trees/Animal Genes : TreeFamMIS18BP1
HOVERGENQ6P0N0
HOGENOMQ6P0N0
Homologs : HomoloGeneMIS18BP1
Homology/Alignments : Family Browser (UCSC)MIS18BP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMIS18BP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MIS18BP1
dbVarMIS18BP1
ClinVarMIS18BP1
1000_GenomesMIS18BP1 
Exome Variant ServerMIS18BP1
ExAC (Exome Aggregation Consortium)MIS18BP1 (select the gene name)
Genetic variants : HAPMAP55320
Genomic Variants (DGV)MIS18BP1 [DGVbeta]
DECIPHERMIS18BP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMIS18BP1 
Mutations
ICGC Data PortalMIS18BP1 
TCGA Data PortalMIS18BP1 
Broad Tumor PortalMIS18BP1
OASIS PortalMIS18BP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMIS18BP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMIS18BP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MIS18BP1
DgiDB (Drug Gene Interaction Database)MIS18BP1
DoCM (Curated mutations)MIS18BP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MIS18BP1 (select a term)
intoGenMIS18BP1
Cancer3DMIS18BP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMIS18BP1
Genetic Testing Registry MIS18BP1
NextProtQ6P0N0 [Medical]
TSGene55320
GENETestsMIS18BP1
Target ValidationMIS18BP1
Huge Navigator MIS18BP1 [HugePedia]
snp3D : Map Gene to Disease55320
BioCentury BCIQMIS18BP1
ClinGenMIS18BP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55320
Chemical/Pharm GKB GenePA134927557
Clinical trialMIS18BP1
Miscellaneous
canSAR (ICR)MIS18BP1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIS18BP1
EVEXMIS18BP1
GoPubMedMIS18BP1
iHOPMIS18BP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:04 CEST 2017

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