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MISP (mitotic spindle positioning)

Identity

Alias_namesC19orf21
chromosome 19 open reading frame 21
Alias_symbol (synonym)DKFZp686H18209
Caprice
MISP1
Other alias
HGNC (Hugo) MISP
LocusID (NCBI) 126353
Atlas_Id 70325
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 751113 and ends at 764319 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EVPL (17q25.1) / MISP (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MISP   27000
Cards
Entrez_Gene (NCBI)MISP  126353  mitotic spindle positioning
AliasesC19orf21; MISP1
GeneCards (Weizmann)MISP
Ensembl hg19 (Hinxton)ENSG00000099812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099812 [Gene_View]  chr19:751113-764319 [Contig_View]  MISP [Vega]
ICGC DataPortalENSG00000099812
TCGA cBioPortalMISP
AceView (NCBI)MISP
Genatlas (Paris)MISP
WikiGenes126353
SOURCE (Princeton)MISP
Genetics Home Reference (NIH)MISP
Genomic and cartography
GoldenPath hg38 (UCSC)MISP  -     chr19:751113-764319 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MISP  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblMISP - 19p13.3 [CytoView hg19]  MISP - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIMISP [Mapview hg19]  MISP [Mapview hg38]
OMIM615289   
Gene and transcription
Genbank (Entrez)AW272530 BC042125 BC052236 BX648389 BX648815
RefSeq transcript (Entrez)NM_173481
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MISP
Cluster EST : UnigeneHs.439180 [ NCBI ]
CGAP (NCI)Hs.439180
Alternative Splicing GalleryENSG00000099812
Gene ExpressionMISP [ NCBI-GEO ]   MISP [ EBI - ARRAY_EXPRESS ]   MISP [ SEEK ]   MISP [ MEM ]
Gene Expression Viewer (FireBrowse)MISP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126353
GTEX Portal (Tissue expression)MISP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVT2
Splice isoforms : SwissVarQ8IVT2
PhosPhoSitePlusQ8IVT2
Domains : Interpro (EBI)AKAP2_C   
Domain families : Pfam (Sanger)AKAP2_C (PF15304)   
Domain families : Pfam (NCBI)pfam15304   
Conserved Domain (NCBI)MISP
DMDM Disease mutations126353
Blocks (Seattle)MISP
SuperfamilyQ8IVT2
Human Protein AtlasENSG00000099812
Peptide AtlasQ8IVT2
HPRD12695
IPIIPI00217121   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVT2
IntAct (EBI)Q8IVT2
FunCoupENSG00000099812
BioGRIDMISP
STRING (EMBL)MISP
ZODIACMISP
Ontologies - Pathways
QuickGOQ8IVT2
Ontology : AmiGOactin binding  cytoskeleton  plasma membrane  focal adhesion  cell cortex  cell cycle  intracellular membrane-bounded organelle  cell division  
Ontology : EGO-EBIactin binding  cytoskeleton  plasma membrane  focal adhesion  cell cortex  cell cycle  intracellular membrane-bounded organelle  cell division  
NDEx NetworkMISP
Atlas of Cancer Signalling NetworkMISP
Wikipedia pathwaysMISP
Orthology - Evolution
OrthoDB126353
GeneTree (enSembl)ENSG00000099812
Phylogenetic Trees/Animal Genes : TreeFamMISP
HOVERGENQ8IVT2
HOGENOMQ8IVT2
Homologs : HomoloGeneMISP
Homology/Alignments : Family Browser (UCSC)MISP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMISP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MISP
dbVarMISP
ClinVarMISP
1000_GenomesMISP 
Exome Variant ServerMISP
ExAC (Exome Aggregation Consortium)MISP (select the gene name)
Genetic variants : HAPMAP126353
Genomic Variants (DGV)MISP [DGVbeta]
DECIPHERMISP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMISP 
Mutations
ICGC Data PortalMISP 
TCGA Data PortalMISP 
Broad Tumor PortalMISP
OASIS PortalMISP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMISP
BioMutasearch MISP
DgiDB (Drug Gene Interaction Database)MISP
DoCM (Curated mutations)MISP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MISP (select a term)
intoGenMISP
Cancer3DMISP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615289   
Orphanet
MedgenMISP
Genetic Testing Registry MISP
NextProtQ8IVT2 [Medical]
TSGene126353
GENETestsMISP
Target ValidationMISP
Huge Navigator MISP [HugePedia]
snp3D : Map Gene to Disease126353
BioCentury BCIQMISP
ClinGenMISP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126353
Chemical/Pharm GKB GenePA134861073
Clinical trialMISP
Miscellaneous
canSAR (ICR)MISP (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMISP
EVEXMISP
GoPubMedMISP
iHOPMISP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:04 CEST 2017

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