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MITD1 (microtubule interacting and trafficking domain containing 1)

Identity

Alias_namesMIT, microtubule interacting and transport, domain containing 1
Alias_symbol (synonym)LOC129531
Other alias-
HGNC (Hugo) MITD1
LocusID (NCBI) 129531
Atlas_Id 70326
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 99169263 and ends at 99181061 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RTN4 (2p16.1) / MITD1 (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MITD1   25207
Cards
Entrez_Gene (NCBI)MITD1  129531  microtubule interacting and trafficking domain containing 1
Aliases
GeneCards (Weizmann)MITD1
Ensembl hg19 (Hinxton)ENSG00000158411 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158411 [Gene_View]  chr2:99169263-99181061 [Contig_View]  MITD1 [Vega]
ICGC DataPortalENSG00000158411
TCGA cBioPortalMITD1
AceView (NCBI)MITD1
Genatlas (Paris)MITD1
WikiGenes129531
SOURCE (Princeton)MITD1
Genetics Home Reference (NIH)MITD1
Genomic and cartography
GoldenPath hg38 (UCSC)MITD1  -     chr2:99169263-99181061 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MITD1  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblMITD1 - 2q11.2 [CytoView hg19]  MITD1 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBIMITD1 [Mapview hg19]  MITD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK311658 AL161992 BC018453 BG504564 BU507044
RefSeq transcript (Entrez)NM_001320417 NM_001320418 NM_001320419 NM_138798
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MITD1
Cluster EST : UnigeneHs.14222 [ NCBI ]
CGAP (NCI)Hs.14222
Alternative Splicing GalleryENSG00000158411
Gene ExpressionMITD1 [ NCBI-GEO ]   MITD1 [ EBI - ARRAY_EXPRESS ]   MITD1 [ SEEK ]   MITD1 [ MEM ]
Gene Expression Viewer (FireBrowse)MITD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)129531
GTEX Portal (Tissue expression)MITD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WV92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WV92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WV92
Splice isoforms : SwissVarQ8WV92
PhosPhoSitePlusQ8WV92
Domains : Interpro (EBI)MIT    MIT_C   
Domain families : Pfam (Sanger)MIT (PF04212)    MIT_C (PF16565)   
Domain families : Pfam (NCBI)pfam04212    pfam16565   
Domain families : Smart (EMBL)MIT (SM00745)  
Conserved Domain (NCBI)MITD1
DMDM Disease mutations129531
Blocks (Seattle)MITD1
PDB (SRS)2YMB    4A5X    4A5Z   
PDB (PDBSum)2YMB    4A5X    4A5Z   
PDB (IMB)2YMB    4A5X    4A5Z   
PDB (RSDB)2YMB    4A5X    4A5Z   
Structural Biology KnowledgeBase2YMB    4A5X    4A5Z   
SCOP (Structural Classification of Proteins)2YMB    4A5X    4A5Z   
CATH (Classification of proteins structures)2YMB    4A5X    4A5Z   
SuperfamilyQ8WV92
Human Protein AtlasENSG00000158411
Peptide AtlasQ8WV92
HPRD14044
IPIIPI00103065   IPI00916058   IPI00916171   IPI00917485   IPI00917655   
Protein Interaction databases
DIP (DOE-UCLA)Q8WV92
IntAct (EBI)Q8WV92
FunCoupENSG00000158411
BioGRIDMITD1
STRING (EMBL)MITD1
ZODIACMITD1
Ontologies - Pathways
QuickGOQ8WV92
Ontology : AmiGOmitotic cytokinesis  cell separation after cytokinesis  protein binding  extrinsic component of membrane  protein domain specific binding  midbody  midbody  late endosome membrane  negative regulation of protein binding  phosphatidylinositol binding  viral budding via host ESCRT complex  protein homodimerization activity  intracellular membrane-bounded organelle  extracellular exosome  multivesicular body sorting pathway  
Ontology : EGO-EBImitotic cytokinesis  cell separation after cytokinesis  protein binding  extrinsic component of membrane  protein domain specific binding  midbody  midbody  late endosome membrane  negative regulation of protein binding  phosphatidylinositol binding  viral budding via host ESCRT complex  protein homodimerization activity  intracellular membrane-bounded organelle  extracellular exosome  multivesicular body sorting pathway  
NDEx NetworkMITD1
Atlas of Cancer Signalling NetworkMITD1
Wikipedia pathwaysMITD1
Orthology - Evolution
OrthoDB129531
GeneTree (enSembl)ENSG00000158411
Phylogenetic Trees/Animal Genes : TreeFamMITD1
HOVERGENQ8WV92
HOGENOMQ8WV92
Homologs : HomoloGeneMITD1
Homology/Alignments : Family Browser (UCSC)MITD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMITD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MITD1
dbVarMITD1
ClinVarMITD1
1000_GenomesMITD1 
Exome Variant ServerMITD1
ExAC (Exome Aggregation Consortium)MITD1 (select the gene name)
Genetic variants : HAPMAP129531
Genomic Variants (DGV)MITD1 [DGVbeta]
DECIPHERMITD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMITD1 
Mutations
ICGC Data PortalMITD1 
TCGA Data PortalMITD1 
Broad Tumor PortalMITD1
OASIS PortalMITD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMITD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMITD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MITD1
DgiDB (Drug Gene Interaction Database)MITD1
DoCM (Curated mutations)MITD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MITD1 (select a term)
intoGenMITD1
Cancer3DMITD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMITD1
Genetic Testing Registry MITD1
NextProtQ8WV92 [Medical]
TSGene129531
GENETestsMITD1
Target ValidationMITD1
Huge Navigator MITD1 [HugePedia]
snp3D : Map Gene to Disease129531
BioCentury BCIQMITD1
ClinGenMITD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD129531
Chemical/Pharm GKB GenePA147357601
Clinical trialMITD1
Miscellaneous
canSAR (ICR)MITD1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMITD1
EVEXMITD1
GoPubMedMITD1
iHOPMITD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:04 CEST 2017

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