Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MKRN1 (makorin ring finger protein 1)

Identity

Other namesRNF61
HGNC (Hugo) MKRN1
LocusID (NCBI) 23608
Location 7q34
Location_base_pair Starts at 140155983 and ends at 140179369 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)MKRN1   7112
Entrez_Gene (NCBI)MKRN1  23608  makorin ring finger protein 1
Cards
GeneCards (Weizmann)MKRN1
Ensembl (Hinxton)ENSG00000133606 [Gene_View]  chr7:140155983-140179369 [Contig_View]  MKRN1 [Vega]
AceView (NCBI)MKRN1
Genatlas (Paris)MKRN1
SOURCE (Stanford)NM_001145125 NM_013446
Genomic and cartography
GoldenPath (UCSC)MKRN1  -  7q34   chr7:140155983-140179369 -  7q34   [Description]    (hg19-Feb_2009)
EnsemblMKRN1 - 7q34 [CytoView]
Mapping of homologs : NCBIMKRN1 [Mapview]
OMIM607754   
Gene and transcription
Genbank (Entrez)AB209298 AF117233 AF192784 AI828363 AK024987
RefSeq transcript (SRS)NM_001145125 NM_013446
RefSeq transcript (Entrez)NM_001145125 NM_013446
RefSeq genomic (SRS)AC_000068 AC_000139 NC_000007 NC_018918 NT_007914 NT_079596 NW_001839073 NW_004078033
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NC_018918 NT_007914 NT_079596 NW_001839073 NW_004078033
Consensus coding sequences : CCDS (NCBI)MKRN1
Cluster EST : UnigeneHs.490347 [ SRS ] Hs.490347 [ NCBI ]
CGAP (NCI)Hs.490347
Alternative Splicing : Fast-db (Paris)GSHG0028636
Alternative Splicing GalleryENSG00000133606
Gene ExpressionMKRN1 [ NCBI-GEO ]   MKRN1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHC7 (SRS) Q9UHC7 (Uniprot)
NextProtQ9UHC7
With graphics : InterProQ9UHC7
Splice isoforms : SwissVarQ9UHC7(Swissvar)
Domaine pattern : Prosite (SRS)ZF_C3H1 (PS50103)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (SRS)Makorin-related    Znf_CCCH    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domains : Interpro (EBI)Makorin-related    Znf_CCCH    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Related proteins : CluSTrQ9UHC7
Domain families : Pfam (SRS)zf-CCCH (PF00642)    zf-RING_2 (PF13639)   
Domain families : Pfam (Sanger)zf-CCCH (PF00642)    zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam00642    pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  ZnF_C3H1 (SM00356)  
DMDM23608
Blocks (Seattle)Q9UHC7
Human Protein AtlasENSG00000133606
HPRD09673
IPIIPI00033350   IPI00946774   IPI00973591   IPI00921845   IPI01015445   IPI00945768   IPI00947318   IPI00946335   IPI00947035   IPI00947551   IPI00947058   IPI00946491   IPI00944929   IPI00945351   IPI00947187   IPI00946589   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHC7
IntAct (EBI)Q9UHC7
FunCoupENSG00000133606
REACTOMEMKRN1
Protein Interaction Database23608
BioGRIDMKRN1
InParanoidQ9UHC7
Interologous Interaction database Q9UHC7
IntegromeDBMKRN1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MKRN1
SNP (GeneSNP Utah)MKRN1
SNP : HGBaseMKRN1
Genetic variants : HAPMAPMKRN1
Somatic Mutations in Cancer : COSMICMKRN1 
CONAN: Copy Number AnalysisMKRN1 
Mutations and Diseases : HGMDMKRN1
OMIM607754   
GENETests607754   
Disease Genetic AssociationMKRN1
Huge Navigator MKRN1 [HugePedia]  MKRN1 [HugeCancerGEM]
Genomic VariantsMKRN1  MKRN1 [DGVbeta]
snp3D : Map Gene to Disease23608
General knowledge
Homologs : HomoloGeneMKRN1
Homology/Alignments : Family Browser (UCSC)MKRN1
Phylogenetic Trees/Animal Genes : TreeFamMKRN1
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.- [ Enzyme-SRS ]   6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
Chemical/Protein Interactions : CTD23608
Chemical/Pharm GKB GenePA30831
Clinical trialMKRN1
Cancer Resource (Charite)ENSG00000133606
Ontology : AmiGOmolecular_function  nucleic acid binding  chromatin binding  cellular_component  biological_process  zinc ion binding  protein ubiquitination  ligase activity  metal ion binding  
Ontology : EGO-EBImolecular_function  nucleic acid binding  chromatin binding  cellular_component  biological_process  zinc ion binding  protein ubiquitination  ligase activity  metal ion binding  
Other databases
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
PubGeneMKRN1
iHOPMKRN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:21:37 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.