Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MKRN2OS (MKRN2 opposite strand)

Identity

Alias_namesMKRN2-AS1
C3orf83
MKRN2 antisense RNA 1
chromosome 3 open reading frame 83
Other alias
HGNC (Hugo) MKRN2OS
LocusID (NCBI) 100129480
Atlas_Id 70330
Location 3p25.2  [Link to chromosome band 3p25]
Location_base_pair Starts at 12539781 and ends at 12545464 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MKRN2OS   40375
Cards
Entrez_Gene (NCBI)MKRN2OS  100129480  MKRN2 opposite strand
AliasesC3orf83; MKRN2-AS1
GeneCards (Weizmann)MKRN2OS
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:12539781-12545464 [Contig_View]  MKRN2OS [Vega]
TCGA cBioPortalMKRN2OS
AceView (NCBI)MKRN2OS
Genatlas (Paris)MKRN2OS
WikiGenes100129480
SOURCE (Princeton)MKRN2OS
Genetics Home Reference (NIH)MKRN2OS
Genomic and cartography
GoldenPath hg38 (UCSC)MKRN2OS  -     chr3:12539781-12545464 -  3p25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MKRN2OS  -     3p25.2   [Description]    (hg19-Feb_2009)
EnsemblMKRN2OS - 3p25.2 [CytoView hg19]  MKRN2OS - 3p25.2 [CytoView hg38]
Mapping of homologs : NCBIMKRN2OS [Mapview hg19]  MKRN2OS [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001195279
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MKRN2OS
Cluster EST : UnigeneHs.572974 [ NCBI ]
CGAP (NCI)Hs.572974
Gene ExpressionMKRN2OS [ NCBI-GEO ]   MKRN2OS [ EBI - ARRAY_EXPRESS ]   MKRN2OS [ SEEK ]   MKRN2OS [ MEM ]
Gene Expression Viewer (FireBrowse)MKRN2OS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129480
GTEX Portal (Tissue expression)MKRN2OS
Protein : pattern, domain, 3D structure
UniProt/SwissProtH3BPM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH3BPM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH3BPM6
Splice isoforms : SwissVarH3BPM6
PhosPhoSitePlusH3BPM6
Domains : Interpro (EBI)DUF4796   
Domain families : Pfam (Sanger)DUF4796 (PF16044)   
Domain families : Pfam (NCBI)pfam16044   
Conserved Domain (NCBI)MKRN2OS
DMDM Disease mutations100129480
Blocks (Seattle)MKRN2OS
SuperfamilyH3BPM6
Peptide AtlasH3BPM6
IPIIPI00975532   
Protein Interaction databases
DIP (DOE-UCLA)H3BPM6
IntAct (EBI)H3BPM6
BioGRIDMKRN2OS
STRING (EMBL)MKRN2OS
ZODIACMKRN2OS
Ontologies - Pathways
QuickGOH3BPM6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMKRN2OS
Atlas of Cancer Signalling NetworkMKRN2OS
Wikipedia pathwaysMKRN2OS
Orthology - Evolution
OrthoDB100129480
Phylogenetic Trees/Animal Genes : TreeFamMKRN2OS
HOVERGENH3BPM6
HOGENOMH3BPM6
Homologs : HomoloGeneMKRN2OS
Homology/Alignments : Family Browser (UCSC)MKRN2OS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMKRN2OS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MKRN2OS
dbVarMKRN2OS
ClinVarMKRN2OS
1000_GenomesMKRN2OS 
Exome Variant ServerMKRN2OS
ExAC (Exome Aggregation Consortium)MKRN2OS (select the gene name)
Genetic variants : HAPMAP100129480
Genomic Variants (DGV)MKRN2OS [DGVbeta]
DECIPHERMKRN2OS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMKRN2OS 
Mutations
ICGC Data PortalMKRN2OS 
TCGA Data PortalMKRN2OS 
Broad Tumor PortalMKRN2OS
OASIS PortalMKRN2OS [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMKRN2OS
BioMutasearch MKRN2OS
DgiDB (Drug Gene Interaction Database)MKRN2OS
DoCM (Curated mutations)MKRN2OS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MKRN2OS (select a term)
intoGenMKRN2OS
Cancer3DMKRN2OS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMKRN2OS
Genetic Testing Registry MKRN2OS
NextProtH3BPM6 [Medical]
TSGene100129480
GENETestsMKRN2OS
Target ValidationMKRN2OS
Huge Navigator MKRN2OS [HugePedia]
snp3D : Map Gene to Disease100129480
BioCentury BCIQMKRN2OS
ClinGenMKRN2OS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129480
Chemical/Pharm GKB GenePA166049069
Clinical trialMKRN2OS
Miscellaneous
canSAR (ICR)MKRN2OS (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMKRN2OS
EVEXMKRN2OS
GoPubMedMKRN2OS
iHOPMKRN2OS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:30:54 CEST 2017

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