Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MKRN9P (makorin ring finger protein 9, pseudogene)

Identity

Alias_namesZNF127L3
MKRN5
MKRNP6
makorin ring finger protein 5
makorin ring finger protein pseudogene 6
Alias_symbol (synonym)MKRN9
RNF65
Other alias
HGNC (Hugo) MKRN9P
LocusID (NCBI) 400058
Atlas_Id 70333
Location 12q21.32  [Link to chromosome band 12q21]
Location_base_pair Starts at 88176663 and ends at 88178488 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MKRN9P   7116
Cards
Entrez_Gene (NCBI)MKRN9P  400058  makorin ring finger protein 9, pseudogene
AliasesMKRN5; MKRN9; MKRNP6; RNF65; 
ZNF127L3
GeneCards (Weizmann)MKRN9P
Ensembl hg19 (Hinxton) [Gene_View]  chr12:88176663-88178488 [Contig_View]  MKRN9P [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:88176663-88178488 [Contig_View]  MKRN9P [Vega]
TCGA cBioPortalMKRN9P
AceView (NCBI)MKRN9P
Genatlas (Paris)MKRN9P
WikiGenes400058
SOURCE (Princeton)MKRN9P
Genetics Home Reference (NIH)MKRN9P
Genomic and cartography
GoldenPath hg19 (UCSC)MKRN9P  -     chr12:88176663-88178488 -  12q21.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MKRN9P  -     12q21.32   [Description]    (hg38-Dec_2013)
EnsemblMKRN9P - 12q21.32 [CytoView hg19]  MKRN9P - 12q21.32 [CytoView hg38]
Mapping of homologs : NCBIMKRN9P [Mapview hg19]  MKRN9P [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC067894
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_004764 NG_024036 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)MKRN9P
Cluster EST : UnigeneHs.572212 [ NCBI ]
CGAP (NCI)Hs.572212
Gene ExpressionMKRN9P [ NCBI-GEO ]   MKRN9P [ EBI - ARRAY_EXPRESS ]   MKRN9P [ SEEK ]   MKRN9P [ MEM ]
Gene Expression Viewer (FireBrowse)MKRN9P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400058
GTEX Portal (Tissue expression)MKRN9P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NVV0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NVV0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NVV0
Splice isoforms : SwissVarQ6NVV0
PhosPhoSitePlusQ6NVV0
Domains : Interpro (EBI)Makorin-related   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MKRN9P
DMDM Disease mutations400058
Blocks (Seattle)MKRN9P
SuperfamilyQ6NVV0
Peptide AtlasQ6NVV0
IPIIPI00432864   IPI00748712   
Protein Interaction databases
DIP (DOE-UCLA)Q6NVV0
IntAct (EBI)Q6NVV0
BioGRIDMKRN9P
STRING (EMBL)MKRN9P
ZODIACMKRN9P
Ontologies - Pathways
QuickGOQ6NVV0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMKRN9P
Atlas of Cancer Signalling NetworkMKRN9P
Wikipedia pathwaysMKRN9P
Orthology - Evolution
OrthoDB400058
Phylogenetic Trees/Animal Genes : TreeFamMKRN9P
HOVERGENQ6NVV0
HOGENOMQ6NVV0
Homologs : HomoloGeneMKRN9P
Homology/Alignments : Family Browser (UCSC)MKRN9P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMKRN9P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MKRN9P
dbVarMKRN9P
ClinVarMKRN9P
1000_GenomesMKRN9P 
Exome Variant ServerMKRN9P
ExAC (Exome Aggregation Consortium)MKRN9P (select the gene name)
Genetic variants : HAPMAP400058
Genomic Variants (DGV)MKRN9P [DGVbeta]
DECIPHER (Syndromes)12:88176663-88178488  
CONAN: Copy Number AnalysisMKRN9P 
Mutations
ICGC Data PortalMKRN9P 
TCGA Data PortalMKRN9P 
Broad Tumor PortalMKRN9P
OASIS PortalMKRN9P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMKRN9P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MKRN9P
DgiDB (Drug Gene Interaction Database)MKRN9P
DoCM (Curated mutations)MKRN9P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MKRN9P (select a term)
intoGenMKRN9P
Cancer3DMKRN9P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMKRN9P
Genetic Testing Registry MKRN9P
NextProtQ6NVV0 [Medical]
TSGene400058
GENETestsMKRN9P
Huge Navigator MKRN9P [HugePedia]
snp3D : Map Gene to Disease400058
BioCentury BCIQMKRN9P
ClinGenMKRN9P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400058
Clinical trialMKRN9P
Miscellaneous
canSAR (ICR)MKRN9P (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMKRN9P
EVEXMKRN9P
GoPubMedMKRN9P
iHOPMKRN9P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:33:19 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.