Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA
Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

Donate (in Euros)

Donate (in US Dollars)


MLF2 (myeloid leukemia factor 2)

Identity

Other namesNTN4
HGNC (Hugo) MLF2
LocusID (NCBI) 8079
Location 12p13.31
Location_base_pair Starts at 6857158 and ends at 6862082 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MLF2   7126
Cards
Entrez_Gene (NCBI)MLF2  8079  myeloid leukemia factor 2
GeneCards (Weizmann)MLF2
Ensembl hg19 (Hinxton)ENSG00000089693 [Gene_View]  chr12:6857158-6862082 [Contig_View]  MLF2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000089693 [Gene_View]  chr12:6857158-6862082 [Contig_View]  MLF2 [Vega]
ICGC DataPortalENSG00000089693
cBioPortalMLF2
AceView (NCBI)MLF2
Genatlas (Paris)MLF2
WikiGenes8079
SOURCE (Princeton)MLF2
Genomic and cartography
GoldenPath hg19 (UCSC)MLF2  -     chr12:6857158-6862082 -  12p13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MLF2  -     12p13.31   [Description]    (hg38-Dec_2013)
EnsemblMLF2 - 12p13.31 [CytoView hg19]  MLF2 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIMLF2 [Mapview hg19]  MLF2 [Mapview hg38]
OMIM601401   
Gene and transcription
Genbank (Entrez)AF070539 AK289869 AK313998 BC000898 BC002340
RefSeq transcript (Entrez)NM_005439
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009759 NW_004929382
Consensus coding sequences : CCDS (NCBI)MLF2
Cluster EST : UnigeneHs.524214 [ NCBI ]
CGAP (NCI)Hs.524214
Alternative Splicing : Fast-db (Paris)GSHG0007209
Alternative Splicing GalleryENSG00000089693
Gene ExpressionMLF2 [ NCBI-GEO ]     MLF2 [ SEEK ]   MLF2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15773 (Uniprot)
NextProtQ15773  [Medical]
With graphics : InterProQ15773
Splice isoforms : SwissVarQ15773 (Swissvar)
Domains : Interpro (EBI)Myeloid_leukemia_factor   
Related proteins : CluSTrQ15773
Domain families : Pfam (Sanger)Mlf1IP (PF10248)   
Domain families : Pfam (NCBI)pfam10248   
DMDM Disease mutations8079
Blocks (Seattle)Q15773
Human Protein AtlasENSG00000089693
Peptide AtlasQ15773
HPRD03238
IPIIPI00023095   IPI01010157   IPI01009640   IPI01015291   
Protein Interaction databases
DIP (DOE-UCLA)Q15773
IntAct (EBI)Q15773
FunCoupENSG00000089693
BioGRIDMLF2
IntegromeDBMLF2
STRING (EMBL)MLF2
Ontologies - Pathways
QuickGOQ15773
Ontology : AmiGOprotein binding  nucleus  cytoplasm  defense response  membrane  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  defense response  membrane  
Protein Interaction DatabaseMLF2
DoCM (Curated mutations)MLF2
Wikipedia pathwaysMLF2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerMLF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MLF2
dbVarMLF2
ClinVarMLF2
1000_GenomesMLF2 
Exome Variant ServerMLF2
SNP (GeneSNP Utah)MLF2
SNP : HGBaseMLF2
Genetic variants : HAPMAPMLF2
Genomic Variants (DGV)MLF2 [DGVbeta]
Mutations
ICGC Data PortalENSG00000089693 
Somatic Mutations in Cancer : COSMICMLF2 
CONAN: Copy Number AnalysisMLF2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)12:6857158-6862082
Mutations and Diseases : HGMDMLF2
OMIM601401   
MedgenMLF2
NextProtQ15773 [Medical]
GENETestsMLF2
Disease Genetic AssociationMLF2
Huge Navigator MLF2 [HugePedia]  MLF2 [HugeCancerGEM]
snp3D : Map Gene to Disease8079
DGIdb (Drug Gene Interaction db)MLF2
General knowledge
Homologs : HomoloGeneMLF2
Homology/Alignments : Family Browser (UCSC)MLF2
Phylogenetic Trees/Animal Genes : TreeFamMLF2
Chemical/Protein Interactions : CTD8079
Chemical/Pharm GKB GenePA30844
Clinical trialMLF2
Cancer Resource (Charite)ENSG00000089693
Other databases
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
CoreMineMLF2
GoPubMedMLF2
iHOPMLF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 16:33:50 CET 2015

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.