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MLIP (muscular LMNA interacting protein)

Identity

Alias_namesC6orf142
chromosome 6 open reading frame 142
Alias_symbol (synonym)MGC18257
CIP
Other alias
HGNC (Hugo) MLIP
LocusID (NCBI) 90523
Atlas_Id 70339
Location 6p12.1  [Link to chromosome band 6p12]
Location_base_pair Starts at 54018916 and ends at 54218084 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CANX (5q35.3) / MLIP (6p12.1)MLIP (6p12.1) / GRIK4 (11q23.3)TMEM260 (14q22.3) / MLIP (6p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;14)(p12;q22) TMEM260/MLIP


External links

Nomenclature
HGNC (Hugo)MLIP   21355
Cards
Entrez_Gene (NCBI)MLIP  90523  muscular LMNA interacting protein
AliasesC6orf142; CIP
GeneCards (Weizmann)MLIP
Ensembl hg19 (Hinxton)ENSG00000146147 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146147 [Gene_View]  ENSG00000146147 [Sequence]  chr6:54018916-54218084 [Contig_View]  MLIP [Vega]
ICGC DataPortalENSG00000146147
TCGA cBioPortalMLIP
AceView (NCBI)MLIP
Genatlas (Paris)MLIP
WikiGenes90523
SOURCE (Princeton)MLIP
Genetics Home Reference (NIH)MLIP
Genomic and cartography
GoldenPath hg38 (UCSC)MLIP  -     chr6:54018916-54218084 +  6p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MLIP  -     6p12.1   [Description]    (hg19-Feb_2009)
EnsemblMLIP - 6p12.1 [CytoView hg19]  MLIP - 6p12.1 [CytoView hg38]
Mapping of homologs : NCBIMLIP [Mapview hg19]  MLIP [Mapview hg38]
OMIM614106   
Gene and transcription
Genbank (Entrez)AF317593 AK055530 AK294797 AK294890 AK311190
RefSeq transcript (Entrez)NM_001281746 NM_001281747 NM_138569
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MLIP
Cluster EST : UnigeneHs.591803 [ NCBI ]
CGAP (NCI)Hs.591803
Alternative Splicing GalleryENSG00000146147
Gene ExpressionMLIP [ NCBI-GEO ]   MLIP [ EBI - ARRAY_EXPRESS ]   MLIP [ SEEK ]   MLIP [ MEM ]
Gene Expression Viewer (FireBrowse)MLIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90523
GTEX Portal (Tissue expression)MLIP
Human Protein AtlasENSG00000146147-MLIP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWP3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWP3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWP3
Splice isoforms : SwissVarQ5VWP3
PhosPhoSitePlusQ5VWP3
Domains : Interpro (EBI)MLIP   
Domain families : Pfam (Sanger)MLIP (PF15274)   
Domain families : Pfam (NCBI)pfam15274   
Conserved Domain (NCBI)MLIP
DMDM Disease mutations90523
Blocks (Seattle)MLIP
SuperfamilyQ5VWP3
Human Protein Atlas [tissue]ENSG00000146147-MLIP [tissue]
Peptide AtlasQ5VWP3
HPRD12853
IPIIPI00043637   IPI00922212   IPI00749329   IPI00955881   IPI00477761   IPI00965879   IPI00968254   IPI00964296   IPI00922134   IPI00963977   IPI00964026   IPI00965108   IPI00966662   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWP3
IntAct (EBI)Q5VWP3
FunCoupENSG00000146147
BioGRIDMLIP
STRING (EMBL)MLIP
ZODIACMLIP
Ontologies - Pathways
QuickGOQ5VWP3
Ontology : AmiGOnuclear envelope  PML body  nuclear lumen  
Ontology : EGO-EBInuclear envelope  PML body  nuclear lumen  
NDEx NetworkMLIP
Atlas of Cancer Signalling NetworkMLIP
Wikipedia pathwaysMLIP
Orthology - Evolution
OrthoDB90523
GeneTree (enSembl)ENSG00000146147
Phylogenetic Trees/Animal Genes : TreeFamMLIP
HOVERGENQ5VWP3
HOGENOMQ5VWP3
Homologs : HomoloGeneMLIP
Homology/Alignments : Family Browser (UCSC)MLIP
Gene fusions - Rearrangements
Fusion : QuiverMLIP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMLIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MLIP
dbVarMLIP
ClinVarMLIP
1000_GenomesMLIP 
Exome Variant ServerMLIP
ExAC (Exome Aggregation Consortium)ENSG00000146147
GNOMAD BrowserENSG00000146147
Varsome BrowserMLIP
Genetic variants : HAPMAP90523
Genomic Variants (DGV)MLIP [DGVbeta]
DECIPHERMLIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMLIP 
Mutations
ICGC Data PortalMLIP 
TCGA Data PortalMLIP 
Broad Tumor PortalMLIP
OASIS PortalMLIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMLIP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMLIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MLIP
DgiDB (Drug Gene Interaction Database)MLIP
DoCM (Curated mutations)MLIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MLIP (select a term)
intoGenMLIP
Cancer3DMLIP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614106   
Orphanet
DisGeNETMLIP
MedgenMLIP
Genetic Testing Registry MLIP
NextProtQ5VWP3 [Medical]
TSGene90523
GENETestsMLIP
Target ValidationMLIP
Huge Navigator MLIP [HugePedia]
snp3D : Map Gene to Disease90523
BioCentury BCIQMLIP
ClinGenMLIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90523
Chemical/Pharm GKB GenePA134918634
Clinical trialMLIP
Miscellaneous
canSAR (ICR)MLIP (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMLIP
EVEXMLIP
GoPubMedMLIP
iHOPMLIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 14:18:03 CEST 2018

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