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MMD (monocyte to macrophage differentiation associated)

Identity

Alias_namesmonocyte to macrophage differentiation-associated
Alias_symbol (synonym)MMA
PAQR11
Other aliasMMD1
HGNC (Hugo) MMD
LocusID (NCBI) 23531
Atlas_Id 54914
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 55392613 and ends at 55421980 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MMD (17q22) / NOL4L (20q11.21)MMD (17q22) / NOL4L20q11.21 ()MMD 17q22 C20orf112

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MMD   7153
Cards
Entrez_Gene (NCBI)MMD  23531  monocyte to macrophage differentiation associated
AliasesMMA; MMD1; PAQR11
GeneCards (Weizmann)MMD
Ensembl hg19 (Hinxton)ENSG00000108960 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108960 [Gene_View]  chr17:55392613-55421980 [Contig_View]  MMD [Vega]
ICGC DataPortalENSG00000108960
TCGA cBioPortalMMD
AceView (NCBI)MMD
Genatlas (Paris)MMD
WikiGenes23531
SOURCE (Princeton)MMD
Genetics Home Reference (NIH)MMD
Genomic and cartography
GoldenPath hg38 (UCSC)MMD  -     chr17:55392613-55421980 -  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MMD  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblMMD - 17q22 [CytoView hg19]  MMD - 17q22 [CytoView hg38]
Mapping of homologs : NCBIMMD [Mapview hg19]  MMD [Mapview hg38]
OMIM604467   
Gene and transcription
Genbank (Entrez)AK303810 AK312760 AY424289 BC026324 BI546449
RefSeq transcript (Entrez)NM_012329
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MMD
Cluster EST : UnigeneHs.656753 [ NCBI ]
CGAP (NCI)Hs.656753
Alternative Splicing GalleryENSG00000108960
Gene ExpressionMMD [ NCBI-GEO ]   MMD [ EBI - ARRAY_EXPRESS ]   MMD [ SEEK ]   MMD [ MEM ]
Gene Expression Viewer (FireBrowse)MMD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23531
GTEX Portal (Tissue expression)MMD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15546   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15546  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15546
Splice isoforms : SwissVarQ15546
PhosPhoSitePlusQ15546
Domains : Interpro (EBI)AdipoR/HlyIII-related    Hy-lIII   
Domain families : Pfam (Sanger)HlyIII (PF03006)   
Domain families : Pfam (NCBI)pfam03006   
Conserved Domain (NCBI)MMD
DMDM Disease mutations23531
Blocks (Seattle)MMD
SuperfamilyQ15546
Human Protein AtlasENSG00000108960
Peptide AtlasQ15546
HPRD06835
IPIIPI00018112   IPI00910964   
Protein Interaction databases
DIP (DOE-UCLA)Q15546
IntAct (EBI)Q15546
FunCoupENSG00000108960
BioGRIDMMD
STRING (EMBL)MMD
ZODIACMMD
Ontologies - Pathways
QuickGOQ15546
Ontology : AmiGOprotein kinase activity  receptor activity  lysosome  lysosomal membrane  Golgi apparatus  integral component of plasma membrane  protein phosphorylation  membrane  cytolysis  late endosome membrane  regulation of protein localization  positive regulation of neuron differentiation  positive regulation of protein kinase activity  
Ontology : EGO-EBIprotein kinase activity  receptor activity  lysosome  lysosomal membrane  Golgi apparatus  integral component of plasma membrane  protein phosphorylation  membrane  cytolysis  late endosome membrane  regulation of protein localization  positive regulation of neuron differentiation  positive regulation of protein kinase activity  
NDEx NetworkMMD
Atlas of Cancer Signalling NetworkMMD
Wikipedia pathwaysMMD
Orthology - Evolution
OrthoDB23531
GeneTree (enSembl)ENSG00000108960
Phylogenetic Trees/Animal Genes : TreeFamMMD
HOVERGENQ15546
HOGENOMQ15546
Homologs : HomoloGeneMMD
Homology/Alignments : Family Browser (UCSC)MMD
Gene fusions - Rearrangements
Fusion: TCGAMMD 17q22 C20orf112 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMMD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MMD
dbVarMMD
ClinVarMMD
1000_GenomesMMD 
Exome Variant ServerMMD
ExAC (Exome Aggregation Consortium)MMD (select the gene name)
Genetic variants : HAPMAP23531
Genomic Variants (DGV)MMD [DGVbeta]
DECIPHERMMD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMMD 
Mutations
ICGC Data PortalMMD 
TCGA Data PortalMMD 
Broad Tumor PortalMMD
OASIS PortalMMD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMMD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMMD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MMD
DgiDB (Drug Gene Interaction Database)MMD
DoCM (Curated mutations)MMD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MMD (select a term)
intoGenMMD
Cancer3DMMD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604467   
Orphanet
MedgenMMD
Genetic Testing Registry MMD
NextProtQ15546 [Medical]
TSGene23531
GENETestsMMD
Target ValidationMMD
Huge Navigator MMD [HugePedia]
snp3D : Map Gene to Disease23531
BioCentury BCIQMMD
ClinGenMMD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23531
Chemical/Pharm GKB GenePA30863
Clinical trialMMD
Miscellaneous
canSAR (ICR)MMD (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMMD
EVEXMMD
GoPubMedMMD
iHOPMMD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:20:17 CEST 2017

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