Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MMP20 (matrix metallopeptidase 20)

Identity

Other namesAI2A2
MMP-20
HGNC (Hugo) MMP20
LocusID (NCBI) 9313
Location 11q22.2
Location_base_pair Starts at 102447566 and ends at 102496063 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MMP20   7167
Cards
Entrez_Gene (NCBI)MMP20  9313  matrix metallopeptidase 20
GeneCards (Weizmann)MMP20
Ensembl (Hinxton)ENSG00000137674 [Gene_View]  chr11:102447566-102496063 [Contig_View]  MMP20 [Vega]
AceView (NCBI)MMP20
Genatlas (Paris)MMP20
WikiGenes9313
SOURCE (Princeton)NM_004771
Genomic and cartography
GoldenPath (UCSC)MMP20  -  11q22.2   chr11:102447566-102496063 -  11q22.2   [Description]    (hg19-Feb_2009)
EnsemblMMP20 - 11q22.2 [CytoView]
Mapping of homologs : NCBIMMP20 [Mapview]
OMIM204700   604629   612529   
Gene and transcription
Genbank (Entrez)AJ296177 BC152741 Y12779
RefSeq transcript (Entrez)NM_004771
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_012151 NT_033899 NW_001838042 NW_004929381
Consensus coding sequences : CCDS (NCBI)MMP20
Cluster EST : UnigeneHs.591946 [ NCBI ]
CGAP (NCI)Hs.591946
Alternative Splicing : Fast-db (Paris)GSHG0006124
Alternative Splicing GalleryENSG00000137674
Gene ExpressionMMP20 [ NCBI-GEO ]     MMP20 [ SEEK ]   MMP20 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60882 (Uniprot)
NextProtO60882  [Medical]
With graphics : InterProO60882
Splice isoforms : SwissVarO60882 (Swissvar)
Catalytic activity : Enzyme3.4.24.- [ Enzyme-Expasy ]   3.4.24.-3.4.24.- [ IntEnz-EBI ]   3.4.24.- [ BRENDA ]   3.4.24.- [ KEGG ]   
Domaine pattern : Prosite (Expaxy)CYSTEINE_SWITCH (PS00546)    HEMOPEXIN (PS00024)    HEMOPEXIN_2 (PS51642)    ZINC_PROTEASE (PS00142)   
Domains : Interpro (EBI)Hemopexin-like_dom    Hemopexin-like_repeat    MetalloPept_cat_dom    Pept_M10_metallopeptidase    Pept_M10A    Pept_M10A_Metazoans    Pept_M10A_Zn_BS    Peptidase_Metallo    Peptidoglycan-bd-like   
Related proteins : CluSTrO60882
Domain families : Pfam (Sanger)Hemopexin (PF00045)    Peptidase_M10 (PF00413)    PG_binding_1 (PF01471)   
Domain families : Pfam (NCBI)pfam00045    pfam00413    pfam01471   
Domain families : Smart (EMBL)HX (SM00120)  ZnMc (SM00235)  
DMDM Disease mutations9313
Blocks (Seattle)O60882
PDB (SRS)2JSD   
PDB (PDBSum)2JSD   
PDB (IMB)2JSD   
PDB (RSDB)2JSD   
Human Protein AtlasENSG00000137674
Peptide AtlasO60882
HPRD05218
IPIIPI00032404   
Protein Interaction databases
DIP (DOE-UCLA)O60882
IntAct (EBI)O60882
FunCoupENSG00000137674
BioGRIDMMP20
InParanoidO60882
Interologous Interaction database O60882
IntegromeDBMMP20
STRING (EMBL)MMP20
Ontologies - Pathways
Ontology : AmiGOmetalloendopeptidase activity  calcium ion binding  protein binding  extracellular region  proteinaceous extracellular matrix  extracellular space  proteolysis  zinc ion binding  extracellular matrix disassembly  extracellular matrix organization  collagen catabolic process  regulation of enamel mineralization  amelogenesis  
Ontology : EGO-EBImetalloendopeptidase activity  calcium ion binding  protein binding  extracellular region  proteinaceous extracellular matrix  extracellular space  proteolysis  zinc ion binding  extracellular matrix disassembly  extracellular matrix organization  collagen catabolic process  regulation of enamel mineralization  amelogenesis  
REACTOMEMMP20
Protein Interaction DatabaseMMP20
Wikipedia pathwaysMMP20
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MMP20
SNP (GeneSNP Utah)MMP20
SNP : HGBaseMMP20
Genetic variants : HAPMAPMMP20
1000_GenomesMMP20 
ICGC programENSG00000137674 
Somatic Mutations in Cancer : COSMICMMP20 
CONAN: Copy Number AnalysisMMP20 
Mutations and Diseases : HGMDMMP20
OMIM204700    604629    612529   
GENETestsMMP20
Disease Genetic AssociationMMP20
Huge Navigator MMP20 [HugePedia]  MMP20 [HugeCancerGEM]
Genomic VariantsMMP20  MMP20 [DGVbeta]
Exome VariantMMP20
dbVarMMP20
ClinVarMMP20
snp3D : Map Gene to Disease9313
General knowledge
Homologs : HomoloGeneMMP20
Homology/Alignments : Family Browser (UCSC)MMP20
Phylogenetic Trees/Animal Genes : TreeFamMMP20
Chemical/Protein Interactions : CTD9313
Chemical/Pharm GKB GenePA30878
Clinical trialMMP20
Cancer Resource (Charite)ENSG00000137674
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
CoreMineMMP20
iHOPMMP20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:03:57 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.