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MMRN1 (multimerin 1)

Identity

Alias_namesMMRN
multimerin
Alias_symbol (synonym)ECM
EMILIN4
GPIa*
Other alias
HGNC (Hugo) MMRN1
LocusID (NCBI) 22915
Atlas_Id 55768
Location 4q22.1  [Link to chromosome band 4q22]
Location_base_pair Starts at 90816052 and ends at 90875780 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCSER1 (4q22.1) / MMRN1 (4q22.1)SPATA5 (4q28.1) / MMRN1 (4q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MMRN1   7178
Cards
Entrez_Gene (NCBI)MMRN1  22915  multimerin 1
AliasesECM; EMILIN4; GPIa*; MMRN
GeneCards (Weizmann)MMRN1
Ensembl hg19 (Hinxton)ENSG00000138722 [Gene_View]  chr4:90816052-90875780 [Contig_View]  MMRN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138722 [Gene_View]  chr4:90816052-90875780 [Contig_View]  MMRN1 [Vega]
ICGC DataPortalENSG00000138722
TCGA cBioPortalMMRN1
AceView (NCBI)MMRN1
Genatlas (Paris)MMRN1
WikiGenes22915
SOURCE (Princeton)MMRN1
Genetics Home Reference (NIH)MMRN1
Genomic and cartography
GoldenPath hg19 (UCSC)MMRN1  -     chr4:90816052-90875780 +  4q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MMRN1  -     4q22.1   [Description]    (hg38-Dec_2013)
EnsemblMMRN1 - 4q22.1 [CytoView hg19]  MMRN1 - 4q22.1 [CytoView hg38]
Mapping of homologs : NCBIMMRN1 [Mapview hg19]  MMRN1 [Mapview hg38]
OMIM601456   
Gene and transcription
Genbank (Entrez)AK125557 AK302421 AK313566 BC063848 BM126740
RefSeq transcript (Entrez)NM_007351
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_032895 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)MMRN1
Cluster EST : UnigeneHs.268107 [ NCBI ]
CGAP (NCI)Hs.268107
Alternative Splicing GalleryENSG00000138722
Gene ExpressionMMRN1 [ NCBI-GEO ]   MMRN1 [ EBI - ARRAY_EXPRESS ]   MMRN1 [ SEEK ]   MMRN1 [ MEM ]
Gene Expression Viewer (FireBrowse)MMRN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22915
GTEX Portal (Tissue expression)MMRN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13201   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13201  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13201
Splice isoforms : SwissVarQ13201
PhosPhoSitePlusQ13201
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EMI (PS51041)   
Domains : Interpro (EBI)C1q_dom    EGF-like_CS    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    EMI_domain    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)    EGF (PF00008)    EMI (PF07546)   
Domain families : Pfam (NCBI)pfam00386    pfam00008    pfam07546   
Domain families : Smart (EMBL)C1Q (SM00110)  EGF (SM00181)  
Conserved Domain (NCBI)MMRN1
DMDM Disease mutations22915
Blocks (Seattle)MMRN1
SuperfamilyQ13201
Human Protein AtlasENSG00000138722
Peptide AtlasQ13201
HPRD03267
IPIIPI00012269   IPI00745154   IPI00967837   
Protein Interaction databases
DIP (DOE-UCLA)Q13201
IntAct (EBI)Q13201
FunCoupENSG00000138722
BioGRIDMMRN1
STRING (EMBL)MMRN1
ZODIACMMRN1
Ontologies - Pathways
QuickGOQ13201
Ontology : AmiGOplatelet degranulation  calcium ion binding  protein binding  extracellular region  cell adhesion  blood coagulation  platelet alpha granule lumen  
Ontology : EGO-EBIplatelet degranulation  calcium ion binding  protein binding  extracellular region  cell adhesion  blood coagulation  platelet alpha granule lumen  
NDEx NetworkMMRN1
Atlas of Cancer Signalling NetworkMMRN1
Wikipedia pathwaysMMRN1
Orthology - Evolution
OrthoDB22915
GeneTree (enSembl)ENSG00000138722
Phylogenetic Trees/Animal Genes : TreeFamMMRN1
HOVERGENQ13201
HOGENOMQ13201
Homologs : HomoloGeneMMRN1
Homology/Alignments : Family Browser (UCSC)MMRN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMMRN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MMRN1
dbVarMMRN1
ClinVarMMRN1
1000_GenomesMMRN1 
Exome Variant ServerMMRN1
ExAC (Exome Aggregation Consortium)MMRN1 (select the gene name)
Genetic variants : HAPMAP22915
Genomic Variants (DGV)MMRN1 [DGVbeta]
DECIPHER (Syndromes)4:90816052-90875780  ENSG00000138722
CONAN: Copy Number AnalysisMMRN1 
Mutations
ICGC Data PortalMMRN1 
TCGA Data PortalMMRN1 
Broad Tumor PortalMMRN1
OASIS PortalMMRN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMMRN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMMRN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MMRN1
DgiDB (Drug Gene Interaction Database)MMRN1
DoCM (Curated mutations)MMRN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MMRN1 (select a term)
intoGenMMRN1
Cancer3DMMRN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601456   
Orphanet
MedgenMMRN1
Genetic Testing Registry MMRN1
NextProtQ13201 [Medical]
TSGene22915
GENETestsMMRN1
Huge Navigator MMRN1 [HugePedia]
snp3D : Map Gene to Disease22915
BioCentury BCIQMMRN1
ClinGenMMRN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22915
Chemical/Pharm GKB GenePA30891
Clinical trialMMRN1
Miscellaneous
canSAR (ICR)MMRN1 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMMRN1
EVEXMMRN1
GoPubMedMMRN1
iHOPMMRN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:17:10 CET 2017

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