Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MMS22L (MMS22 like, DNA repair protein)

Identity

Alias_namesC6orf167
chromosome 6 open reading frame 167
MMS22-like, DNA repair protein
Alias_symbol (synonym)dJ39B17.2
Other alias
HGNC (Hugo) MMS22L
LocusID (NCBI) 253714
Atlas_Id 51746
Location 6q16.1  [Link to chromosome band 6q16]
Location_base_pair Starts at 97142161 and ends at 97283277 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MMS22L   21475
Cards
Entrez_Gene (NCBI)MMS22L  253714  MMS22 like, DNA repair protein
AliasesC6orf167; dJ39B17.2
GeneCards (Weizmann)MMS22L
Ensembl hg19 (Hinxton)ENSG00000146263 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146263 [Gene_View]  ENSG00000146263 [Sequence]  chr6:97142161-97283277 [Contig_View]  MMS22L [Vega]
ICGC DataPortalENSG00000146263
TCGA cBioPortalMMS22L
AceView (NCBI)MMS22L
Genatlas (Paris)MMS22L
WikiGenes253714
SOURCE (Princeton)MMS22L
Genetics Home Reference (NIH)MMS22L
Genomic and cartography
GoldenPath hg38 (UCSC)MMS22L  -     chr6:97142161-97283277 -  6q16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MMS22L  -     6q16.1   [Description]    (hg19-Feb_2009)
EnsemblMMS22L - 6q16.1 [CytoView hg19]  MMS22L - 6q16.1 [CytoView hg38]
Mapping of homologs : NCBIMMS22L [Mapview hg19]  MMS22L [Mapview hg38]
OMIM615614   
Gene and transcription
Genbank (Entrez)AK128060 BC110860 BC142948 BX538214 CR749603
RefSeq transcript (Entrez)NM_001350599 NM_001350600 NM_198468
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MMS22L
Cluster EST : UnigeneHs.444292 [ NCBI ]
CGAP (NCI)Hs.444292
Alternative Splicing GalleryENSG00000146263
Gene ExpressionMMS22L [ NCBI-GEO ]   MMS22L [ EBI - ARRAY_EXPRESS ]   MMS22L [ SEEK ]   MMS22L [ MEM ]
Gene Expression Viewer (FireBrowse)MMS22L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253714
GTEX Portal (Tissue expression)MMS22L
Human Protein AtlasENSG00000146263-MMS22L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRQ5
Splice isoforms : SwissVarQ6ZRQ5
PhosPhoSitePlusQ6ZRQ5
Domains : Interpro (EBI)MMS22L_C    MMS22L_N   
Domain families : Pfam (Sanger)MMS22L_C (PF14911)    MMS22L_N (PF14910)   
Domain families : Pfam (NCBI)pfam14911    pfam14910   
Conserved Domain (NCBI)MMS22L
DMDM Disease mutations253714
Blocks (Seattle)MMS22L
SuperfamilyQ6ZRQ5
Human Protein Atlas [tissue]ENSG00000146263-MMS22L [tissue]
Peptide AtlasQ6ZRQ5
HPRD12865
IPIIPI00807526   IPI00968019   IPI00964850   IPI00967776   IPI00965116   IPI00964041   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRQ5
IntAct (EBI)Q6ZRQ5
FunCoupENSG00000146263
BioGRIDMMS22L
STRING (EMBL)MMS22L
ZODIACMMS22L
Ontologies - Pathways
QuickGOQ6ZRQ5
Ontology : AmiGOdouble-strand break repair via homologous recombination  protein binding  nucleoplasm  cytosol  replication fork processing  FACT complex  MCM complex  nuclear replication fork  
Ontology : EGO-EBIdouble-strand break repair via homologous recombination  protein binding  nucleoplasm  cytosol  replication fork processing  FACT complex  MCM complex  nuclear replication fork  
NDEx NetworkMMS22L
Atlas of Cancer Signalling NetworkMMS22L
Wikipedia pathwaysMMS22L
Orthology - Evolution
OrthoDB253714
GeneTree (enSembl)ENSG00000146263
Phylogenetic Trees/Animal Genes : TreeFamMMS22L
HOVERGENQ6ZRQ5
HOGENOMQ6ZRQ5
Homologs : HomoloGeneMMS22L
Homology/Alignments : Family Browser (UCSC)MMS22L
Gene fusions - Rearrangements
Fusion : QuiverMMS22L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMMS22L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MMS22L
dbVarMMS22L
ClinVarMMS22L
1000_GenomesMMS22L 
Exome Variant ServerMMS22L
ExAC (Exome Aggregation Consortium)ENSG00000146263
GNOMAD BrowserENSG00000146263
Varsome BrowserMMS22L
Genetic variants : HAPMAP253714
Genomic Variants (DGV)MMS22L [DGVbeta]
DECIPHERMMS22L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMMS22L 
Mutations
ICGC Data PortalMMS22L 
TCGA Data PortalMMS22L 
Broad Tumor PortalMMS22L
OASIS PortalMMS22L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMMS22L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMMS22L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MMS22L
DgiDB (Drug Gene Interaction Database)MMS22L
DoCM (Curated mutations)MMS22L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MMS22L (select a term)
intoGenMMS22L
Cancer3DMMS22L(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615614   
Orphanet
DisGeNETMMS22L
MedgenMMS22L
Genetic Testing Registry MMS22L
NextProtQ6ZRQ5 [Medical]
TSGene253714
GENETestsMMS22L
Target ValidationMMS22L
Huge Navigator MMS22L [HugePedia]
snp3D : Map Gene to Disease253714
BioCentury BCIQMMS22L
ClinGenMMS22L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253714
Chemical/Pharm GKB GenePA134878007
Clinical trialMMS22L
Miscellaneous
canSAR (ICR)MMS22L (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMMS22L
EVEXMMS22L
GoPubMedMMS22L
iHOPMMS22L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:23:29 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.