Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MNS1 (meiosis specific nuclear structural 1)

Identity

Alias_symbol (synonym)FLJ11222
SPATA40
Other alias
HGNC (Hugo) MNS1
LocusID (NCBI) 55329
Atlas_Id 70354
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 56428731 and ends at 56465137 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MNS1   29636
Cards
Entrez_Gene (NCBI)MNS1  55329  meiosis specific nuclear structural 1
AliasesSPATA40
GeneCards (Weizmann)MNS1
Ensembl hg19 (Hinxton)ENSG00000138587 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138587 [Gene_View]  chr15:56428731-56465137 [Contig_View]  MNS1 [Vega]
ICGC DataPortalENSG00000138587
TCGA cBioPortalMNS1
AceView (NCBI)MNS1
Genatlas (Paris)MNS1
WikiGenes55329
SOURCE (Princeton)MNS1
Genetics Home Reference (NIH)MNS1
Genomic and cartography
GoldenPath hg38 (UCSC)MNS1  -     chr15:56428731-56465137 -  15q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MNS1  -     15q21.3   [Description]    (hg19-Feb_2009)
EnsemblMNS1 - 15q21.3 [CytoView hg19]  MNS1 - 15q21.3 [CytoView hg38]
Mapping of homologs : NCBIMNS1 [Mapview hg19]  MNS1 [Mapview hg38]
OMIM610766   
Gene and transcription
Genbank (Entrez)AK002084 AK057542 BC012554 BC031046 BC034991
RefSeq transcript (Entrez)NM_018365
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MNS1
Cluster EST : UnigeneHs.444483 [ NCBI ]
CGAP (NCI)Hs.444483
Alternative Splicing GalleryENSG00000138587
Gene ExpressionMNS1 [ NCBI-GEO ]   MNS1 [ EBI - ARRAY_EXPRESS ]   MNS1 [ SEEK ]   MNS1 [ MEM ]
Gene Expression Viewer (FireBrowse)MNS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55329
GTEX Portal (Tissue expression)MNS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEH6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEH6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEH6
Splice isoforms : SwissVarQ8NEH6
PhosPhoSitePlusQ8NEH6
Domains : Interpro (EBI)MNS1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MNS1
DMDM Disease mutations55329
Blocks (Seattle)MNS1
SuperfamilyQ8NEH6
Human Protein AtlasENSG00000138587
Peptide AtlasQ8NEH6
HPRD10967
IPIIPI00549955   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEH6
IntAct (EBI)Q8NEH6
FunCoupENSG00000138587
BioGRIDMNS1
STRING (EMBL)MNS1
ZODIACMNS1
Ontologies - Pathways
QuickGOQ8NEH6
Ontology : AmiGOnuclear envelope  intermediate filament  axoneme  spermatogenesis  motile cilium  sperm flagellum  identical protein binding  cilium organization  positive regulation of cilium assembly  meiotic cell cycle  left/right axis specification  
Ontology : EGO-EBInuclear envelope  intermediate filament  axoneme  spermatogenesis  motile cilium  sperm flagellum  identical protein binding  cilium organization  positive regulation of cilium assembly  meiotic cell cycle  left/right axis specification  
NDEx NetworkMNS1
Atlas of Cancer Signalling NetworkMNS1
Wikipedia pathwaysMNS1
Orthology - Evolution
OrthoDB55329
GeneTree (enSembl)ENSG00000138587
Phylogenetic Trees/Animal Genes : TreeFamMNS1
HOVERGENQ8NEH6
HOGENOMQ8NEH6
Homologs : HomoloGeneMNS1
Homology/Alignments : Family Browser (UCSC)MNS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMNS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MNS1
dbVarMNS1
ClinVarMNS1
1000_GenomesMNS1 
Exome Variant ServerMNS1
ExAC (Exome Aggregation Consortium)MNS1 (select the gene name)
Genetic variants : HAPMAP55329
Genomic Variants (DGV)MNS1 [DGVbeta]
DECIPHERMNS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMNS1 
Mutations
ICGC Data PortalMNS1 
TCGA Data PortalMNS1 
Broad Tumor PortalMNS1
OASIS PortalMNS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMNS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMNS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MNS1
DgiDB (Drug Gene Interaction Database)MNS1
DoCM (Curated mutations)MNS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MNS1 (select a term)
intoGenMNS1
Cancer3DMNS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610766   
Orphanet
MedgenMNS1
Genetic Testing Registry MNS1
NextProtQ8NEH6 [Medical]
TSGene55329
GENETestsMNS1
Target ValidationMNS1
Huge Navigator MNS1 [HugePedia]
snp3D : Map Gene to Disease55329
BioCentury BCIQMNS1
ClinGenMNS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55329
Chemical/Pharm GKB GenePA142671346
Clinical trialMNS1
Miscellaneous
canSAR (ICR)MNS1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMNS1
EVEXMNS1
GoPubMedMNS1
iHOPMNS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:30:57 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.