Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MPV17 (MPV17, mitochondrial inner membrane protein)

Identity

Alias_namesMpV17 transgene, murine homolog, glomerulosclerosis
Alias_symbol (synonym)SYM1
Other aliasMTDPS6
HGNC (Hugo) MPV17
LocusID (NCBI) 4358
Atlas_Id 70398
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27309492 and ends at 27323102 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GTF3C2 (2p23.3) / MPV17 (2p23.3)JUN (1p32.1) / MPV17 (2p23.3)PLOD3 (7q22.1) / MPV17 (2p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MPV17   7224
Cards
Entrez_Gene (NCBI)MPV17  4358  MPV17, mitochondrial inner membrane protein
AliasesMTDPS6; SYM1
GeneCards (Weizmann)MPV17
Ensembl hg19 (Hinxton)ENSG00000115204 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115204 [Gene_View]  chr2:27309492-27323102 [Contig_View]  MPV17 [Vega]
ICGC DataPortalENSG00000115204
TCGA cBioPortalMPV17
AceView (NCBI)MPV17
Genatlas (Paris)MPV17
WikiGenes4358
SOURCE (Princeton)MPV17
Genetics Home Reference (NIH)MPV17
Genomic and cartography
GoldenPath hg38 (UCSC)MPV17  -     chr2:27309492-27323102 -  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MPV17  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblMPV17 - 2p23.3 [CytoView hg19]  MPV17 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIMPV17 [Mapview hg19]  MPV17 [Mapview hg38]
OMIM137960   256810   
Gene and transcription
Genbank (Entrez)AF088036 AK093305 AK123373 BC001115 BC016289
RefSeq transcript (Entrez)NM_002437
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MPV17
Cluster EST : UnigeneHs.75659 [ NCBI ]
CGAP (NCI)Hs.75659
Alternative Splicing GalleryENSG00000115204
Gene ExpressionMPV17 [ NCBI-GEO ]   MPV17 [ EBI - ARRAY_EXPRESS ]   MPV17 [ SEEK ]   MPV17 [ MEM ]
Gene Expression Viewer (FireBrowse)MPV17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4358
GTEX Portal (Tissue expression)MPV17
Protein : pattern, domain, 3D structure
UniProt/SwissProtP39210   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP39210  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP39210
Splice isoforms : SwissVarP39210
PhosPhoSitePlusP39210
Domains : Interpro (EBI)Mpv17_PMP22   
Domain families : Pfam (Sanger)Mpv17_PMP22 (PF04117)   
Domain families : Pfam (NCBI)pfam04117   
Conserved Domain (NCBI)MPV17
DMDM Disease mutations4358
Blocks (Seattle)MPV17
SuperfamilyP39210
Human Protein AtlasENSG00000115204
Peptide AtlasP39210
HPRD08847
IPIIPI00023958   IPI00893290   IPI00893905   IPI00893014   IPI00893624   IPI00894392   IPI00893772   IPI00892971   IPI00892835   IPI00892687   IPI00892560   IPI00893452   
Protein Interaction databases
DIP (DOE-UCLA)P39210
IntAct (EBI)P39210
FunCoupENSG00000115204
BioGRIDMPV17
STRING (EMBL)MPV17
ZODIACMPV17
Ontologies - Pathways
QuickGOP39210
Ontology : AmiGOmitochondrial genome maintenance  molecular_function  mitochondrion  mitochondrial inner membrane  peroxisome  peroxisome  integral component of membrane  glomerular basement membrane development  cellular response to reactive oxygen species  homeostatic process  inner ear development  regulation of reactive oxygen species metabolic process  
Ontology : EGO-EBImitochondrial genome maintenance  molecular_function  mitochondrion  mitochondrial inner membrane  peroxisome  peroxisome  integral component of membrane  glomerular basement membrane development  cellular response to reactive oxygen species  homeostatic process  inner ear development  regulation of reactive oxygen species metabolic process  
Pathways : KEGGPeroxisome   
NDEx NetworkMPV17
Atlas of Cancer Signalling NetworkMPV17
Wikipedia pathwaysMPV17
Orthology - Evolution
OrthoDB4358
GeneTree (enSembl)ENSG00000115204
Phylogenetic Trees/Animal Genes : TreeFamMPV17
HOVERGENP39210
HOGENOMP39210
Homologs : HomoloGeneMPV17
Homology/Alignments : Family Browser (UCSC)MPV17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMPV17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MPV17
dbVarMPV17
ClinVarMPV17
1000_GenomesMPV17 
Exome Variant ServerMPV17
ExAC (Exome Aggregation Consortium)MPV17 (select the gene name)
Genetic variants : HAPMAP4358
Genomic Variants (DGV)MPV17 [DGVbeta]
DECIPHERMPV17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMPV17 
Mutations
ICGC Data PortalMPV17 
TCGA Data PortalMPV17 
Broad Tumor PortalMPV17
OASIS PortalMPV17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMPV17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMPV17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MPV17
DgiDB (Drug Gene Interaction Database)MPV17
DoCM (Curated mutations)MPV17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MPV17 (select a term)
intoGenMPV17
Cancer3DMPV17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM137960    256810   
Orphanet19812   
MedgenMPV17
Genetic Testing Registry MPV17
NextProtP39210 [Medical]
TSGene4358
GENETestsMPV17
Target ValidationMPV17
Huge Navigator MPV17 [HugePedia]
snp3D : Map Gene to Disease4358
BioCentury BCIQMPV17
ClinGenMPV17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4358
Chemical/Pharm GKB GenePA30929
Clinical trialMPV17
Miscellaneous
canSAR (ICR)MPV17 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMPV17
EVEXMPV17
GoPubMedMPV17
iHOPMPV17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:04 CEST 2017

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