Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MRAP (melanocortin 2 receptor accessory protein)

Identity

Alias_namesC21orf61
chromosome 21 open reading frame 61
Alias_symbol (synonym)B27
FALP
Other aliasFGD2
GCCD2
HGNC (Hugo) MRAP
LocusID (NCBI) 56246
Atlas_Id 56104
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 32291813 and ends at 32312282 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AC006465.3 () / MRAP (21q22.11)EVA1C (21q22.11) / MRAP (21q22.11)MRAP (21q22.11) / SMC2 (9q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRAP   1304
Cards
Entrez_Gene (NCBI)MRAP  56246  melanocortin 2 receptor accessory protein
AliasesB27; C21orf61; FALP; FGD2; 
GCCD2
GeneCards (Weizmann)MRAP
Ensembl hg19 (Hinxton)ENSG00000170262 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170262 [Gene_View]  chr21:32291813-32312282 [Contig_View]  MRAP [Vega]
ICGC DataPortalENSG00000170262
TCGA cBioPortalMRAP
AceView (NCBI)MRAP
Genatlas (Paris)MRAP
WikiGenes56246
SOURCE (Princeton)MRAP
Genetics Home Reference (NIH)MRAP
Genomic and cartography
GoldenPath hg38 (UCSC)MRAP  -     chr21:32291813-32312282 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRAP  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblMRAP - 21q22.11 [CytoView hg19]  MRAP - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIMRAP [Mapview hg19]  MRAP [Mapview hg38]
OMIM607398   609196   
Gene and transcription
Genbank (Entrez)AF454915 AF454916 AF483549 AY079152 BC062721
RefSeq transcript (Entrez)NM_001285394 NM_178817 NM_206898
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRAP
Cluster EST : UnigeneHs.584940 [ NCBI ]
CGAP (NCI)Hs.584940
Alternative Splicing GalleryENSG00000170262
Gene ExpressionMRAP [ NCBI-GEO ]   MRAP [ EBI - ARRAY_EXPRESS ]   MRAP [ SEEK ]   MRAP [ MEM ]
Gene Expression Viewer (FireBrowse)MRAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56246
GTEX Portal (Tissue expression)MRAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCY5
Splice isoforms : SwissVarQ8TCY5
PhosPhoSitePlusQ8TCY5
Domains : Interpro (EBI)MRAP   
Domain families : Pfam (Sanger)MRAP (PF15183)   
Domain families : Pfam (NCBI)pfam15183   
Conserved Domain (NCBI)MRAP
DMDM Disease mutations56246
Blocks (Seattle)MRAP
SuperfamilyQ8TCY5
Human Protein AtlasENSG00000170262
Peptide AtlasQ8TCY5
HPRD10758
IPIIPI01012334   IPI00219581   IPI00219582   IPI00154756   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCY5
IntAct (EBI)Q8TCY5
FunCoupENSG00000170262
BioGRIDMRAP
STRING (EMBL)MRAP
ZODIACMRAP
Ontologies - Pathways
QuickGOQ8TCY5
Ontology : AmiGOprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  integral component of membrane  positive regulation of cAMP biosynthetic process  corticotropin hormone receptor binding  type 3 melanocortin receptor binding  type 4 melanocortin receptor binding  type 5 melanocortin receptor binding  protein localization to cell surface  brown fat cell differentiation  type 1 melanocortin receptor binding  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  integral component of membrane  positive regulation of cAMP biosynthetic process  corticotropin hormone receptor binding  type 3 melanocortin receptor binding  type 4 melanocortin receptor binding  type 5 melanocortin receptor binding  protein localization to cell surface  brown fat cell differentiation  type 1 melanocortin receptor binding  
NDEx NetworkMRAP
Atlas of Cancer Signalling NetworkMRAP
Wikipedia pathwaysMRAP
Orthology - Evolution
OrthoDB56246
GeneTree (enSembl)ENSG00000170262
Phylogenetic Trees/Animal Genes : TreeFamMRAP
HOVERGENQ8TCY5
HOGENOMQ8TCY5
Homologs : HomoloGeneMRAP
Homology/Alignments : Family Browser (UCSC)MRAP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRAP
dbVarMRAP
ClinVarMRAP
1000_GenomesMRAP 
Exome Variant ServerMRAP
ExAC (Exome Aggregation Consortium)MRAP (select the gene name)
Genetic variants : HAPMAP56246
Genomic Variants (DGV)MRAP [DGVbeta]
DECIPHERMRAP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRAP 
Mutations
ICGC Data PortalMRAP 
TCGA Data PortalMRAP 
Broad Tumor PortalMRAP
OASIS PortalMRAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRAP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRAP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Munich Open Variation Database
BioMutasearch MRAP
DgiDB (Drug Gene Interaction Database)MRAP
DoCM (Curated mutations)MRAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRAP (select a term)
intoGenMRAP
Cancer3DMRAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607398    609196   
Orphanet3506   
MedgenMRAP
Genetic Testing Registry MRAP
NextProtQ8TCY5 [Medical]
TSGene56246
GENETestsMRAP
Target ValidationMRAP
Huge Navigator MRAP [HugePedia]
snp3D : Map Gene to Disease56246
BioCentury BCIQMRAP
ClinGenMRAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56246
Chemical/Pharm GKB GenePA25856
Clinical trialMRAP
Miscellaneous
canSAR (ICR)MRAP (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRAP
EVEXMRAP
GoPubMedMRAP
iHOPMRAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:45:17 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.