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MRFAP1 (Morf4 family associated protein 1)

Identity

Alias_symbol (synonym)PAM14
PGR1
Other alias
HGNC (Hugo) MRFAP1
LocusID (NCBI) 93621
Atlas_Id 70407
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 6640091 and ends at 6642743 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COL1A1 (17q21.33) / MRFAP1 (4p16.1)HCFC1 (Xq28) / MRFAP1 (4p16.1)MRFAP1 (4p16.1) / DAGLB (7p22.1)
MRFAP1 (4p16.1) / PPIA (7p13)MRFAP1 (4p16.1) / TACC2 (10q26.13)MRFAP1 (4p16.1) / TOP1 (20q12)
MRPL11 (11q13.2) / MRFAP1 (4p16.1)TACC2 (10q26.13) / MRFAP1 (4p16.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRFAP1   24549
Cards
Entrez_Gene (NCBI)MRFAP1  93621  Morf4 family associated protein 1
AliasesPAM14; PGR1
GeneCards (Weizmann)MRFAP1
Ensembl hg19 (Hinxton)ENSG00000179010 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179010 [Gene_View]  chr4:6640091-6642743 [Contig_View]  MRFAP1 [Vega]
ICGC DataPortalENSG00000179010
TCGA cBioPortalMRFAP1
AceView (NCBI)MRFAP1
Genatlas (Paris)MRFAP1
WikiGenes93621
SOURCE (Princeton)MRFAP1
Genetics Home Reference (NIH)MRFAP1
Genomic and cartography
GoldenPath hg38 (UCSC)MRFAP1  -     chr4:6640091-6642743 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRFAP1  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblMRFAP1 - 4p16.1 [CytoView hg19]  MRFAP1 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIMRFAP1 [Mapview hg19]  MRFAP1 [Mapview hg38]
OMIM616905   
Gene and transcription
Genbank (Entrez)AA486335 AK057736 AK074496 AK123360 AK129651
RefSeq transcript (Entrez)NM_001272053 NM_001272054 NM_033296
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRFAP1
Cluster EST : UnigeneHs.406590 [ NCBI ]
CGAP (NCI)Hs.406590
Alternative Splicing GalleryENSG00000179010
Gene ExpressionMRFAP1 [ NCBI-GEO ]   MRFAP1 [ EBI - ARRAY_EXPRESS ]   MRFAP1 [ SEEK ]   MRFAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)MRFAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93621
GTEX Portal (Tissue expression)MRFAP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y605   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y605  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y605
Splice isoforms : SwissVarQ9Y605
PhosPhoSitePlusQ9Y605
Domains : Interpro (EBI)MRFAP1   
Domain families : Pfam (Sanger)MRFAP1 (PF15155)   
Domain families : Pfam (NCBI)pfam15155   
Conserved Domain (NCBI)MRFAP1
DMDM Disease mutations93621
Blocks (Seattle)MRFAP1
SuperfamilyQ9Y605
Human Protein AtlasENSG00000179010
Peptide AtlasQ9Y605
HPRD17589
IPIIPI00020915   IPI00909990   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y605
IntAct (EBI)Q9Y605
FunCoupENSG00000179010
BioGRIDMRFAP1
STRING (EMBL)MRFAP1
ZODIACMRFAP1
Ontologies - Pathways
QuickGOQ9Y605
Ontology : AmiGOprotein binding  nucleus  cytosol  perinuclear region of cytoplasm  
Ontology : EGO-EBIprotein binding  nucleus  cytosol  perinuclear region of cytoplasm  
NDEx NetworkMRFAP1
Atlas of Cancer Signalling NetworkMRFAP1
Wikipedia pathwaysMRFAP1
Orthology - Evolution
OrthoDB93621
GeneTree (enSembl)ENSG00000179010
Phylogenetic Trees/Animal Genes : TreeFamMRFAP1
HOVERGENQ9Y605
HOGENOMQ9Y605
Homologs : HomoloGeneMRFAP1
Homology/Alignments : Family Browser (UCSC)MRFAP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRFAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRFAP1
dbVarMRFAP1
ClinVarMRFAP1
1000_GenomesMRFAP1 
Exome Variant ServerMRFAP1
ExAC (Exome Aggregation Consortium)MRFAP1 (select the gene name)
Genetic variants : HAPMAP93621
Genomic Variants (DGV)MRFAP1 [DGVbeta]
DECIPHERMRFAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRFAP1 
Mutations
ICGC Data PortalMRFAP1 
TCGA Data PortalMRFAP1 
Broad Tumor PortalMRFAP1
OASIS PortalMRFAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRFAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRFAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MRFAP1
DgiDB (Drug Gene Interaction Database)MRFAP1
DoCM (Curated mutations)MRFAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRFAP1 (select a term)
intoGenMRFAP1
Cancer3DMRFAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616905   
Orphanet
MedgenMRFAP1
Genetic Testing Registry MRFAP1
NextProtQ9Y605 [Medical]
TSGene93621
GENETestsMRFAP1
Target ValidationMRFAP1
Huge Navigator MRFAP1 [HugePedia]
snp3D : Map Gene to Disease93621
BioCentury BCIQMRFAP1
ClinGenMRFAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93621
Chemical/Pharm GKB GenePA142671332
Clinical trialMRFAP1
Miscellaneous
canSAR (ICR)MRFAP1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRFAP1
EVEXMRFAP1
GoPubMedMRFAP1
iHOPMRFAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:20 CEST 2017

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