Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MRGBP (MRG domain binding protein)

Identity

Alias_namesC20orf20
chromosome 20 open reading frame 20
MRG/MORF4L binding protein
Alias_symbol (synonym)FLJ10914
MRG15BP
Eaf7
Other aliasURCC4
HGNC (Hugo) MRGBP
LocusID (NCBI) 55257
Atlas_Id 51396
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 62796405 and ends at 62801738 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRGBP   15866
Cards
Entrez_Gene (NCBI)MRGBP  55257  MRG domain binding protein
AliasesC20orf20; Eaf7; MRG15BP; URCC4
GeneCards (Weizmann)MRGBP
Ensembl hg19 (Hinxton)ENSG00000101189 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101189 [Gene_View]  ENSG00000101189 [Sequence]  chr20:62796405-62801738 [Contig_View]  MRGBP [Vega]
ICGC DataPortalENSG00000101189
TCGA cBioPortalMRGBP
AceView (NCBI)MRGBP
Genatlas (Paris)MRGBP
WikiGenes55257
SOURCE (Princeton)MRGBP
Genetics Home Reference (NIH)MRGBP
Genomic and cartography
GoldenPath hg38 (UCSC)MRGBP  -     chr20:62796405-62801738 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRGBP  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblMRGBP - 20q13.33 [CytoView hg19]  MRGBP - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIMRGBP [Mapview hg19]  MRGBP [Mapview hg38]
OMIM611157   
Gene and transcription
Genbank (Entrez)AB085682 AK001776 BC009889 BC014235 BC018841
RefSeq transcript (Entrez)NM_018270
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRGBP
Cluster EST : UnigeneHs.590870 [ NCBI ]
CGAP (NCI)Hs.590870
Alternative Splicing GalleryENSG00000101189
Gene ExpressionMRGBP [ NCBI-GEO ]   MRGBP [ EBI - ARRAY_EXPRESS ]   MRGBP [ SEEK ]   MRGBP [ MEM ]
Gene Expression Viewer (FireBrowse)MRGBP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55257
GTEX Portal (Tissue expression)MRGBP
Human Protein AtlasENSG00000101189-MRGBP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NV56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NV56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NV56
Splice isoforms : SwissVarQ9NV56
PhosPhoSitePlusQ9NV56
Domains : Interpro (EBI)Eaf7/MRGBP   
Domain families : Pfam (Sanger)Eaf7 (PF07904)   
Domain families : Pfam (NCBI)pfam07904   
Conserved Domain (NCBI)MRGBP
DMDM Disease mutations55257
Blocks (Seattle)MRGBP
PDB (SRS)2N1D   
PDB (PDBSum)2N1D   
PDB (IMB)2N1D   
PDB (RSDB)2N1D   
Structural Biology KnowledgeBase2N1D   
SCOP (Structural Classification of Proteins)2N1D   
CATH (Classification of proteins structures)2N1D   
SuperfamilyQ9NV56
Human Protein Atlas [tissue]ENSG00000101189-MRGBP [tissue]
Peptide AtlasQ9NV56
HPRD16646
IPIIPI00019451   
Protein Interaction databases
DIP (DOE-UCLA)Q9NV56
IntAct (EBI)Q9NV56
FunCoupENSG00000101189
BioGRIDMRGBP
STRING (EMBL)MRGBP
ZODIACMRGBP
Ontologies - Pathways
QuickGOQ9NV56
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  regulation of transcription by RNA polymerase II  histone acetylation  NuA4 histone acetyltransferase complex  regulation of growth  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  regulation of transcription by RNA polymerase II  histone acetylation  NuA4 histone acetyltransferase complex  regulation of growth  
NDEx NetworkMRGBP
Atlas of Cancer Signalling NetworkMRGBP
Wikipedia pathwaysMRGBP
Orthology - Evolution
OrthoDB55257
GeneTree (enSembl)ENSG00000101189
Phylogenetic Trees/Animal Genes : TreeFamMRGBP
HOVERGENQ9NV56
HOGENOMQ9NV56
Homologs : HomoloGeneMRGBP
Homology/Alignments : Family Browser (UCSC)MRGBP
Gene fusions - Rearrangements
Fusion : QuiverMRGBP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRGBP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRGBP
dbVarMRGBP
ClinVarMRGBP
1000_GenomesMRGBP 
Exome Variant ServerMRGBP
ExAC (Exome Aggregation Consortium)ENSG00000101189
GNOMAD BrowserENSG00000101189
Varsome BrowserMRGBP
Genetic variants : HAPMAP55257
Genomic Variants (DGV)MRGBP [DGVbeta]
DECIPHERMRGBP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRGBP 
Mutations
ICGC Data PortalMRGBP 
TCGA Data PortalMRGBP 
Broad Tumor PortalMRGBP
OASIS PortalMRGBP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMRGBP
BioMutasearch MRGBP
DgiDB (Drug Gene Interaction Database)MRGBP
DoCM (Curated mutations)MRGBP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRGBP (select a term)
intoGenMRGBP
Cancer3DMRGBP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611157   
Orphanet
DisGeNETMRGBP
MedgenMRGBP
Genetic Testing Registry MRGBP
NextProtQ9NV56 [Medical]
TSGene55257
GENETestsMRGBP
Target ValidationMRGBP
Huge Navigator MRGBP [HugePedia]
snp3D : Map Gene to Disease55257
BioCentury BCIQMRGBP
ClinGenMRGBP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55257
Chemical/Pharm GKB GenePA25736
Clinical trialMRGBP
Miscellaneous
canSAR (ICR)MRGBP (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRGBP
EVEXMRGBP
GoPubMedMRGBP
iHOPMRGBP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:23:46 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.