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MRI1 (methylthioribose-1-phosphate isomerase 1)

Identity

Alias_namesmethylthioribose-1-phosphate isomerase homolog (S. cerevisiae)
Alias_symbol (synonym)MGC3207
Ypr118w
mtnA
MRDI
Other aliasM1Pi
MTNA
HGNC (Hugo) MRI1
LocusID (NCBI) 84245
Atlas_Id 70418
Location 19p13.13  [Link to chromosome band 19p13]
Location_base_pair Starts at 13764514 and ends at 13774282 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRI1   28469
Cards
Entrez_Gene (NCBI)MRI1  84245  methylthioribose-1-phosphate isomerase 1
AliasesM1Pi; MRDI; MTNA; Ypr118w
GeneCards (Weizmann)MRI1
Ensembl hg19 (Hinxton)ENSG00000037757 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000037757 [Gene_View]  chr19:13764514-13774282 [Contig_View]  MRI1 [Vega]
ICGC DataPortalENSG00000037757
TCGA cBioPortalMRI1
AceView (NCBI)MRI1
Genatlas (Paris)MRI1
WikiGenes84245
SOURCE (Princeton)MRI1
Genetics Home Reference (NIH)MRI1
Genomic and cartography
GoldenPath hg38 (UCSC)MRI1  -     chr19:13764514-13774282 +  19p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRI1  -     19p13.13   [Description]    (hg19-Feb_2009)
EnsemblMRI1 - 19p13.13 [CytoView hg19]  MRI1 - 19p13.13 [CytoView hg38]
Mapping of homologs : NCBIMRI1 [Mapview hg19]  MRI1 [Mapview hg38]
OMIM615105   
Gene and transcription
Genbank (Entrez)AF318324 AL834276 AM392616 AM393224 AY358176
RefSeq transcript (Entrez)NM_001031727 NM_001329572 NM_032285
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRI1
Cluster EST : UnigeneHs.439370 [ NCBI ]
CGAP (NCI)Hs.439370
Alternative Splicing GalleryENSG00000037757
Gene ExpressionMRI1 [ NCBI-GEO ]   MRI1 [ EBI - ARRAY_EXPRESS ]   MRI1 [ SEEK ]   MRI1 [ MEM ]
Gene Expression Viewer (FireBrowse)MRI1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84245
GTEX Portal (Tissue expression)MRI1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BV20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BV20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BV20
Splice isoforms : SwissVarQ9BV20
PhosPhoSitePlusQ9BV20
Domains : Interpro (EBI)IF-2B-related    IF-M1Pi    Initiation_fac_2B_a/b/d    M1Pi_N   
Domain families : Pfam (Sanger)IF-2B (PF01008)   
Domain families : Pfam (NCBI)pfam01008   
Conserved Domain (NCBI)MRI1
DMDM Disease mutations84245
Blocks (Seattle)MRI1
PDB (SRS)4LDQ    4LDR   
PDB (PDBSum)4LDQ    4LDR   
PDB (IMB)4LDQ    4LDR   
PDB (RSDB)4LDQ    4LDR   
Structural Biology KnowledgeBase4LDQ    4LDR   
SCOP (Structural Classification of Proteins)4LDQ    4LDR   
CATH (Classification of proteins structures)4LDQ    4LDR   
SuperfamilyQ9BV20
Human Protein AtlasENSG00000037757
Peptide AtlasQ9BV20
HPRD14548
IPIIPI00005948   IPI00184525   IPI00719027   
Protein Interaction databases
DIP (DOE-UCLA)Q9BV20
IntAct (EBI)Q9BV20
FunCoupENSG00000037757
BioGRIDMRI1
STRING (EMBL)MRI1
ZODIACMRI1
Ontologies - Pathways
QuickGOQ9BV20
Ontology : AmiGOfibrillar center  nucleoplasm  cytosol  cytosol  L-methionine salvage from methylthioadenosine  L-methionine salvage from methylthioadenosine  L-methionine salvage from methylthioadenosine  identical protein binding  cell projection  S-methyl-5-thioribose-1-phosphate isomerase activity  S-methyl-5-thioribose-1-phosphate isomerase activity  
Ontology : EGO-EBIfibrillar center  nucleoplasm  cytosol  cytosol  L-methionine salvage from methylthioadenosine  L-methionine salvage from methylthioadenosine  L-methionine salvage from methylthioadenosine  identical protein binding  cell projection  S-methyl-5-thioribose-1-phosphate isomerase activity  S-methyl-5-thioribose-1-phosphate isomerase activity  
Pathways : KEGGCysteine and methionine metabolism   
NDEx NetworkMRI1
Atlas of Cancer Signalling NetworkMRI1
Wikipedia pathwaysMRI1
Orthology - Evolution
OrthoDB84245
GeneTree (enSembl)ENSG00000037757
Phylogenetic Trees/Animal Genes : TreeFamMRI1
HOVERGENQ9BV20
HOGENOMQ9BV20
Homologs : HomoloGeneMRI1
Homology/Alignments : Family Browser (UCSC)MRI1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRI1
dbVarMRI1
ClinVarMRI1
1000_GenomesMRI1 
Exome Variant ServerMRI1
ExAC (Exome Aggregation Consortium)MRI1 (select the gene name)
Genetic variants : HAPMAP84245
Genomic Variants (DGV)MRI1 [DGVbeta]
DECIPHERMRI1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRI1 
Mutations
ICGC Data PortalMRI1 
TCGA Data PortalMRI1 
Broad Tumor PortalMRI1
OASIS PortalMRI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRI1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRI1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MRI1
DgiDB (Drug Gene Interaction Database)MRI1
DoCM (Curated mutations)MRI1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRI1 (select a term)
intoGenMRI1
Cancer3DMRI1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615105   
Orphanet
MedgenMRI1
Genetic Testing Registry MRI1
NextProtQ9BV20 [Medical]
TSGene84245
GENETestsMRI1
Target ValidationMRI1
Huge Navigator MRI1 [HugePedia]
snp3D : Map Gene to Disease84245
BioCentury BCIQMRI1
ClinGenMRI1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84245
Chemical/Pharm GKB GenePA164723110
Clinical trialMRI1
Miscellaneous
canSAR (ICR)MRI1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRI1
EVEXMRI1
GoPubMedMRI1
iHOPMRI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:32:50 CEST 2017

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