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MRM1 (mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae))

Identity

Alias_namesmitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ22578
Other alias-
HGNC (Hugo) MRM1
LocusID (NCBI) 79922
Atlas_Id 70419
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 34958025 and ends at 34965407 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRM1   26202
Cards
Entrez_Gene (NCBI)MRM1  79922  mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
Aliases
GeneCards (Weizmann)MRM1
Ensembl hg19 (Hinxton)ENSG00000278619 [Gene_View]  chr17:34958025-34965407 [Contig_View]  MRM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000278619 [Gene_View]  chr17:34958025-34965407 [Contig_View]  MRM1 [Vega]
ICGC DataPortalENSG00000278619
TCGA cBioPortalMRM1
AceView (NCBI)MRM1
Genatlas (Paris)MRM1
WikiGenes79922
SOURCE (Princeton)MRM1
Genetics Home Reference (NIH)MRM1
Genomic and cartography
GoldenPath hg19 (UCSC)MRM1  -     chr17:34958025-34965407 +  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MRM1  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblMRM1 - 17q12 [CytoView hg19]  MRM1 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIMRM1 [Mapview hg19]  MRM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026231 AK225449 AK292307 BC009416 BC072411
RefSeq transcript (Entrez)NM_024864
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NT_187614 NW_004929407
Consensus coding sequences : CCDS (NCBI)MRM1
Cluster EST : UnigeneHs.194864 [ NCBI ]
CGAP (NCI)Hs.194864
Alternative Splicing GalleryENSG00000278619
Gene ExpressionMRM1 [ NCBI-GEO ]   MRM1 [ EBI - ARRAY_EXPRESS ]   MRM1 [ SEEK ]   MRM1 [ MEM ]
Gene Expression Viewer (FireBrowse)MRM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79922
GTEX Portal (Tissue expression)MRM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IN84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IN84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IN84
Splice isoforms : SwissVarQ6IN84
PhosPhoSitePlusQ6IN84
Domains : Interpro (EBI)Alpha/beta_knot_MTases    L30e-like    rRNA_MeTrfase_TrmH    SpoU_MeTrfase    SpoU_subst-bd    tRNA_m1G_MTases_N   
Domain families : Pfam (Sanger)SpoU_methylase (PF00588)    SpoU_sub_bind (PF08032)   
Domain families : Pfam (NCBI)pfam00588    pfam08032   
Domain families : Smart (EMBL)SpoU_sub_bind (SM00967)  
Conserved Domain (NCBI)MRM1
DMDM Disease mutations79922
Blocks (Seattle)MRM1
SuperfamilyQ6IN84
Human Protein AtlasENSG00000278619
Peptide AtlasQ6IN84
HPRD08656
IPIIPI00784477   IPI00827737   
Protein Interaction databases
DIP (DOE-UCLA)Q6IN84
IntAct (EBI)Q6IN84
FunCoupENSG00000278619
BioGRIDMRM1
STRING (EMBL)MRM1
ZODIACMRM1
Ontologies - Pathways
QuickGOQ6IN84
Ontology : AmiGORNA methylation  protein binding  mitochondrion  rRNA processing  RNA methyltransferase activity  poly(A) RNA binding  
Ontology : EGO-EBIRNA methylation  protein binding  mitochondrion  rRNA processing  RNA methyltransferase activity  poly(A) RNA binding  
NDEx NetworkMRM1
Atlas of Cancer Signalling NetworkMRM1
Wikipedia pathwaysMRM1
Orthology - Evolution
OrthoDB79922
GeneTree (enSembl)ENSG00000278619
Phylogenetic Trees/Animal Genes : TreeFamMRM1
HOVERGENQ6IN84
HOGENOMQ6IN84
Homologs : HomoloGeneMRM1
Homology/Alignments : Family Browser (UCSC)MRM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRM1
dbVarMRM1
ClinVarMRM1
1000_GenomesMRM1 
Exome Variant ServerMRM1
ExAC (Exome Aggregation Consortium)MRM1 (select the gene name)
Genetic variants : HAPMAP79922
Genomic Variants (DGV)MRM1 [DGVbeta]
DECIPHER (Syndromes)17:34958025-34965407  ENSG00000278619
CONAN: Copy Number AnalysisMRM1 
Mutations
ICGC Data PortalMRM1 
TCGA Data PortalMRM1 
Broad Tumor PortalMRM1
OASIS PortalMRM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRM1
DgiDB (Drug Gene Interaction Database)MRM1
DoCM (Curated mutations)MRM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRM1 (select a term)
intoGenMRM1
Cancer3DMRM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMRM1
Genetic Testing Registry MRM1
NextProtQ6IN84 [Medical]
TSGene79922
GENETestsMRM1
Huge Navigator MRM1 [HugePedia]
snp3D : Map Gene to Disease79922
BioCentury BCIQMRM1
ClinGenMRM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79922
Chemical/Pharm GKB GenePA142671338
Clinical trialMRM1
Miscellaneous
canSAR (ICR)MRM1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRM1
EVEXMRM1
GoPubMedMRM1
iHOPMRM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:33:36 CET 2017

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