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MRM2 (mitochondrial rRNA methyltransferase 2)

Identity

Alias_namesFTSJ2
FtsJ RNA methyltransferase homolog 2 (E. coli)
Alias_symbol (synonym)FJH1
RRMJ2
Other aliasHEL97
HGNC (Hugo) MRM2
LocusID (NCBI) 29960
Atlas_Id 55708
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 2234291 and ends at 2242198 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRM2   16352
Cards
Entrez_Gene (NCBI)MRM2  29960  mitochondrial rRNA methyltransferase 2
AliasesFJH1; FTSJ2; HEL97; RRMJ2
GeneCards (Weizmann)MRM2
Ensembl hg19 (Hinxton)ENSG00000122687 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122687 [Gene_View]  chr7:2234291-2242198 [Contig_View]  MRM2 [Vega]
ICGC DataPortalENSG00000122687
TCGA cBioPortalMRM2
AceView (NCBI)MRM2
Genatlas (Paris)MRM2
WikiGenes29960
SOURCE (Princeton)MRM2
Genetics Home Reference (NIH)MRM2
Genomic and cartography
GoldenPath hg38 (UCSC)MRM2  -     chr7:2234291-2242198 -  7p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRM2  -     7p22.3   [Description]    (hg19-Feb_2009)
EnsemblMRM2 - 7p22.3 [CytoView hg19]  MRM2 - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBIMRM2 [Mapview hg19]  MRM2 [Mapview hg38]
OMIM606906   
Gene and transcription
Genbank (Entrez)AF093415 AK024635 AK302060 BC017106 BC017181
RefSeq transcript (Entrez)NM_013393 NM_177442
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRM2
Cluster EST : UnigeneHs.279877 [ NCBI ]
CGAP (NCI)Hs.279877
Alternative Splicing GalleryENSG00000122687
Gene ExpressionMRM2 [ NCBI-GEO ]   MRM2 [ EBI - ARRAY_EXPRESS ]   MRM2 [ SEEK ]   MRM2 [ MEM ]
Gene Expression Viewer (FireBrowse)MRM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29960
GTEX Portal (Tissue expression)MRM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UI43   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UI43  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UI43
Splice isoforms : SwissVarQ9UI43
PhosPhoSitePlusQ9UI43
Domains : Interpro (EBI)rRNA-MeTfrase_E    rRNA_MeTrfase_FtsJ_dom    SAM-dependent_MTases   
Domain families : Pfam (Sanger)FtsJ (PF01728)   
Domain families : Pfam (NCBI)pfam01728   
Conserved Domain (NCBI)MRM2
DMDM Disease mutations29960
Blocks (Seattle)MRM2
PDB (SRS)2NYU   
PDB (PDBSum)2NYU   
PDB (IMB)2NYU   
PDB (RSDB)2NYU   
Structural Biology KnowledgeBase2NYU   
SCOP (Structural Classification of Proteins)2NYU   
CATH (Classification of proteins structures)2NYU   
SuperfamilyQ9UI43
Human Protein AtlasENSG00000122687
Peptide AtlasQ9UI43
HPRD06067
IPIIPI00006026   IPI00908366   IPI00872509   
Protein Interaction databases
DIP (DOE-UCLA)Q9UI43
IntAct (EBI)Q9UI43
FunCoupENSG00000122687
BioGRIDMRM2
STRING (EMBL)MRM2
ZODIACMRM2
Ontologies - Pathways
QuickGOQ9UI43
Ontology : AmiGOrRNA 2'-O-methylation  nucleolus  mitochondrion  mitochondrial matrix  rRNA processing  cell proliferation  rRNA (uridine-2'-O-)-methyltransferase activity  rRNA (uridine-2'-O-)-methyltransferase activity  rRNA methylation  
Ontology : EGO-EBIrRNA 2'-O-methylation  nucleolus  mitochondrion  mitochondrial matrix  rRNA processing  cell proliferation  rRNA (uridine-2'-O-)-methyltransferase activity  rRNA (uridine-2'-O-)-methyltransferase activity  rRNA methylation  
NDEx NetworkMRM2
Atlas of Cancer Signalling NetworkMRM2
Wikipedia pathwaysMRM2
Orthology - Evolution
OrthoDB29960
GeneTree (enSembl)ENSG00000122687
Phylogenetic Trees/Animal Genes : TreeFamMRM2
HOVERGENQ9UI43
HOGENOMQ9UI43
Homologs : HomoloGeneMRM2
Homology/Alignments : Family Browser (UCSC)MRM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRM2
dbVarMRM2
ClinVarMRM2
1000_GenomesMRM2 
Exome Variant ServerMRM2
ExAC (Exome Aggregation Consortium)MRM2 (select the gene name)
Genetic variants : HAPMAP29960
Genomic Variants (DGV)MRM2 [DGVbeta]
DECIPHERMRM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRM2 
Mutations
ICGC Data PortalMRM2 
TCGA Data PortalMRM2 
Broad Tumor PortalMRM2
OASIS PortalMRM2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMRM2
BioMutasearch MRM2
DgiDB (Drug Gene Interaction Database)MRM2
DoCM (Curated mutations)MRM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRM2 (select a term)
intoGenMRM2
Cancer3DMRM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606906   
Orphanet
MedgenMRM2
Genetic Testing Registry MRM2
NextProtQ9UI43 [Medical]
TSGene29960
GENETestsMRM2
Target ValidationMRM2
Huge Navigator MRM2 [HugePedia]
snp3D : Map Gene to Disease29960
BioCentury BCIQMRM2
ClinGenMRM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29960
Chemical/Pharm GKB GenePA28418
Clinical trialMRM2
Miscellaneous
canSAR (ICR)MRM2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRM2
EVEXMRM2
GoPubMedMRM2
iHOPMRM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:00:40 CEST 2017

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