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MRM3 (mitochondrial rRNA methyltransferase 3)

Identity

Alias_namesRNMTL1
RNA methyltransferase like 1
Alias_symbol (synonym)FLJ10581
HC90
RMTL1
Other alias
HGNC (Hugo) MRM3
LocusID (NCBI) 55178
Atlas_Id 78470
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 782329 and ends at 792509 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRM3   18485
Cards
Entrez_Gene (NCBI)MRM3  55178  mitochondrial rRNA methyltransferase 3
AliasesRMTL1; RNMTL1
GeneCards (Weizmann)MRM3
Ensembl hg19 (Hinxton)ENSG00000171861 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171861 [Gene_View]  chr17:782329-792509 [Contig_View]  MRM3 [Vega]
ICGC DataPortalENSG00000171861
TCGA cBioPortalMRM3
AceView (NCBI)MRM3
Genatlas (Paris)MRM3
WikiGenes55178
SOURCE (Princeton)MRM3
Genetics Home Reference (NIH)MRM3
Genomic and cartography
GoldenPath hg38 (UCSC)MRM3  -     chr17:782329-792509 +  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRM3  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblMRM3 - 17p13.3 [CytoView hg19]  MRM3 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIMRM3 [Mapview hg19]  MRM3 [Mapview hg38]
OMIM612600   
Gene and transcription
Genbank (Entrez)AF177344 AK001443 AK222900 AK225128 BC011550
RefSeq transcript (Entrez)NM_001317947 NM_018146
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRM3
Cluster EST : UnigeneHs.182729 [ NCBI ]
CGAP (NCI)Hs.182729
Alternative Splicing GalleryENSG00000171861
Gene ExpressionMRM3 [ NCBI-GEO ]   MRM3 [ EBI - ARRAY_EXPRESS ]   MRM3 [ SEEK ]   MRM3 [ MEM ]
Gene Expression Viewer (FireBrowse)MRM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55178
GTEX Portal (Tissue expression)MRM3
Human Protein AtlasENSG00000171861-MRM3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HC36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HC36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HC36
Splice isoforms : SwissVarQ9HC36
PhosPhoSitePlusQ9HC36
Domains : Interpro (EBI)Alpha/beta_knot_MTases    L30e-like    SpoU_MeTrfase    SpoU_subst-bd    tRNA_m1G_MTases_N   
Domain families : Pfam (Sanger)SpoU_methylase (PF00588)   
Domain families : Pfam (NCBI)pfam00588   
Domain families : Smart (EMBL)SpoU_sub_bind (SM00967)  
Conserved Domain (NCBI)MRM3
DMDM Disease mutations55178
Blocks (Seattle)MRM3
SuperfamilyQ9HC36
Human Protein Atlas [tissue]ENSG00000171861-MRM3 [tissue]
Peptide AtlasQ9HC36
HPRD15266
IPIIPI00335589   
Protein Interaction databases
DIP (DOE-UCLA)Q9HC36
IntAct (EBI)Q9HC36
FunCoupENSG00000171861
BioGRIDMRM3
STRING (EMBL)MRM3
ZODIACMRM3
Ontologies - Pathways
QuickGOQ9HC36
Ontology : AmiGOrRNA 2'-O-methylation  RNA binding  protein binding  mitochondrion  mitochondrial matrix  rRNA (guanosine-2'-O-)-methyltransferase activity  
Ontology : EGO-EBIrRNA 2'-O-methylation  RNA binding  protein binding  mitochondrion  mitochondrial matrix  rRNA (guanosine-2'-O-)-methyltransferase activity  
NDEx NetworkMRM3
Atlas of Cancer Signalling NetworkMRM3
Wikipedia pathwaysMRM3
Orthology - Evolution
OrthoDB55178
GeneTree (enSembl)ENSG00000171861
Phylogenetic Trees/Animal Genes : TreeFamMRM3
HOVERGENQ9HC36
HOGENOMQ9HC36
Homologs : HomoloGeneMRM3
Homology/Alignments : Family Browser (UCSC)MRM3
Gene fusions - Rearrangements
Fusion: Tumor Portal MRM3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRM3
dbVarMRM3
ClinVarMRM3
1000_GenomesMRM3 
Exome Variant ServerMRM3
ExAC (Exome Aggregation Consortium)ENSG00000171861
GNOMAD BrowserENSG00000171861
Genetic variants : HAPMAP55178
Genomic Variants (DGV)MRM3 [DGVbeta]
DECIPHERMRM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRM3 
Mutations
ICGC Data PortalMRM3 
TCGA Data PortalMRM3 
Broad Tumor PortalMRM3
OASIS PortalMRM3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMRM3
BioMutasearch MRM3
DgiDB (Drug Gene Interaction Database)MRM3
DoCM (Curated mutations)MRM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRM3 (select a term)
intoGenMRM3
Cancer3DMRM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612600   
Orphanet
MedgenMRM3
Genetic Testing Registry MRM3
NextProtQ9HC36 [Medical]
TSGene55178
GENETestsMRM3
Target ValidationMRM3
Huge Navigator MRM3 [HugePedia]
snp3D : Map Gene to Disease55178
BioCentury BCIQMRM3
ClinGenMRM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55178
Chemical/Pharm GKB GenePA38341
Clinical trialMRM3
Miscellaneous
canSAR (ICR)MRM3 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRM3
EVEXMRM3
GoPubMedMRM3
iHOPMRM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:17:43 CET 2017

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