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MRNIP (MRN complex interacting protein)

Identity

Other aliasC5orf45
HGNC (Hugo) MRNIP
LocusID (NCBI) 51149
Atlas_Id 56682
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 179837266 and ends at 179858840 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRNIP   30817
Cards
Entrez_Gene (NCBI)MRNIP  51149  MRN complex interacting protein
AliasesC5orf45
GeneCards (Weizmann)MRNIP
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:179837266-179858840 [Contig_View]  MRNIP [Vega]
TCGA cBioPortalMRNIP
AceView (NCBI)MRNIP
Genatlas (Paris)MRNIP
WikiGenes51149
SOURCE (Princeton)MRNIP
Genetics Home Reference (NIH)MRNIP
Genomic and cartography
GoldenPath hg38 (UCSC)MRNIP  -     chr5:179837266-179858840 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRNIP  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblMRNIP - 5q35.3 [CytoView hg19]  MRNIP - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIMRNIP [Mapview hg19]  MRNIP [Mapview hg38]
OMIM617154   
Gene and transcription
Genbank (Entrez)AF153685 AK125253 AK293901 AK295104 AK298954
RefSeq transcript (Entrez)NM_001017987 NM_001018061 NM_001018062 NM_016175
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRNIP
Cluster EST : UnigeneHs.741169 [ NCBI ]
CGAP (NCI)Hs.741169
Gene ExpressionMRNIP [ NCBI-GEO ]   MRNIP [ EBI - ARRAY_EXPRESS ]   MRNIP [ SEEK ]   MRNIP [ MEM ]
Gene Expression Viewer (FireBrowse)MRNIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51149
GTEX Portal (Tissue expression)MRNIP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NTE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NTE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NTE8
Splice isoforms : SwissVarQ6NTE8
PhosPhoSitePlusQ6NTE8
Domains : Interpro (EBI)MRNIP   
Domain families : Pfam (Sanger)UPF0544 (PF15749)   
Domain families : Pfam (NCBI)pfam15749   
Conserved Domain (NCBI)MRNIP
DMDM Disease mutations51149
Blocks (Seattle)MRNIP
SuperfamilyQ6NTE8
Peptide AtlasQ6NTE8
IPIIPI00155839   IPI00888929   IPI00922395   IPI00604703   IPI00977846   IPI00973799   IPI00978734   IPI00980302   IPI00974530   IPI00973787   IPI00604588   IPI00973979   IPI00974492   IPI00974273   IPI00973963   
Protein Interaction databases
DIP (DOE-UCLA)Q6NTE8
IntAct (EBI)Q6NTE8
BioGRIDMRNIP
STRING (EMBL)MRNIP
ZODIACMRNIP
Ontologies - Pathways
QuickGOQ6NTE8
Ontology : AmiGOmolecular_function  chromatin binding  protein binding  cellular_component  nucleus  nucleoplasm  DNA repair  cellular response to DNA damage stimulus  mitotic G2 DNA damage checkpoint  biological_process  response to ionizing radiation  Mre11 complex  positive regulation of protein kinase activity  protein localization to chromatin  positive regulation of double-strand break repair via homologous recombination  regulation of double-strand break repair via nonhomologous end joining  
Ontology : EGO-EBImolecular_function  chromatin binding  protein binding  cellular_component  nucleus  nucleoplasm  DNA repair  cellular response to DNA damage stimulus  mitotic G2 DNA damage checkpoint  biological_process  response to ionizing radiation  Mre11 complex  positive regulation of protein kinase activity  protein localization to chromatin  positive regulation of double-strand break repair via homologous recombination  regulation of double-strand break repair via nonhomologous end joining  
NDEx NetworkMRNIP
Atlas of Cancer Signalling NetworkMRNIP
Wikipedia pathwaysMRNIP
Orthology - Evolution
OrthoDB51149
Phylogenetic Trees/Animal Genes : TreeFamMRNIP
HOVERGENQ6NTE8
HOGENOMQ6NTE8
Homologs : HomoloGeneMRNIP
Homology/Alignments : Family Browser (UCSC)MRNIP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRNIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRNIP
dbVarMRNIP
ClinVarMRNIP
1000_GenomesMRNIP 
Exome Variant ServerMRNIP
ExAC (Exome Aggregation Consortium)MRNIP (select the gene name)
Genetic variants : HAPMAP51149
Genomic Variants (DGV)MRNIP [DGVbeta]
DECIPHERMRNIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRNIP 
Mutations
ICGC Data PortalMRNIP 
TCGA Data PortalMRNIP 
Broad Tumor PortalMRNIP
OASIS PortalMRNIP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMRNIP
BioMutasearch MRNIP
DgiDB (Drug Gene Interaction Database)MRNIP
DoCM (Curated mutations)MRNIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRNIP (select a term)
intoGenMRNIP
Cancer3DMRNIP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617154   
Orphanet
MedgenMRNIP
Genetic Testing Registry MRNIP
NextProtQ6NTE8 [Medical]
TSGene51149
GENETestsMRNIP
Target ValidationMRNIP
Huge Navigator MRNIP [HugePedia]
snp3D : Map Gene to Disease51149
BioCentury BCIQMRNIP
ClinGenMRNIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51149
Chemical/Pharm GKB GenePA162380286
Clinical trialMRNIP
Miscellaneous
canSAR (ICR)MRNIP (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRNIP
EVEXMRNIP
GoPubMedMRNIP
iHOPMRNIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:45:19 CEST 2017

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