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MRPL1 (mitochondrial ribosomal protein L1)

Identity

Alias_symbol (synonym)BM022
Other aliasL1MT
MRP-L1
HGNC (Hugo) MRPL1
LocusID (NCBI) 65008
Atlas_Id 70431
Location 4q21.1  [Link to chromosome band 4q21]
Location_base_pair Starts at 78783805 and ends at 78873944 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FRAS1 (4q21.21) / MRPL1 (4q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL1   14275
Cards
Entrez_Gene (NCBI)MRPL1  65008  mitochondrial ribosomal protein L1
AliasesBM022; L1MT; MRP-L1
GeneCards (Weizmann)MRPL1
Ensembl hg19 (Hinxton)ENSG00000169288 [Gene_View]  chr4:78783805-78873944 [Contig_View]  MRPL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169288 [Gene_View]  chr4:78783805-78873944 [Contig_View]  MRPL1 [Vega]
ICGC DataPortalENSG00000169288
TCGA cBioPortalMRPL1
AceView (NCBI)MRPL1
Genatlas (Paris)MRPL1
WikiGenes65008
SOURCE (Princeton)MRPL1
Genetics Home Reference (NIH)MRPL1
Genomic and cartography
GoldenPath hg19 (UCSC)MRPL1  -     chr4:78783805-78873944 +  4q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MRPL1  -     4q21.1   [Description]    (hg38-Dec_2013)
EnsemblMRPL1 - 4q21.1 [CytoView hg19]  MRPL1 - 4q21.1 [CytoView hg38]
Mapping of homologs : NCBIMRPL1 [Mapview hg19]  MRPL1 [Mapview hg38]
OMIM611821   
Gene and transcription
Genbank (Entrez)AB049474 AF212225 AK024791 AK315600 BC014356
RefSeq transcript (Entrez)NM_020236
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)MRPL1
Cluster EST : UnigeneHs.532019 [ NCBI ]
CGAP (NCI)Hs.532019
Alternative Splicing GalleryENSG00000169288
Gene ExpressionMRPL1 [ NCBI-GEO ]   MRPL1 [ EBI - ARRAY_EXPRESS ]   MRPL1 [ SEEK ]   MRPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65008
GTEX Portal (Tissue expression)MRPL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYD6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYD6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYD6
Splice isoforms : SwissVarQ9BYD6
PhosPhoSitePlusQ9BYD6
Domains : Interpro (EBI)Ribosomal_L1-like    Ribosomal_L1_2-a/b-sand    Ribosomal_L1_3-a/b-sand    Ribosomal_L1_chr    Ribosomal_L1_mit   
Domain families : Pfam (Sanger)MRL1 (PF13003)   
Domain families : Pfam (NCBI)pfam13003   
Conserved Domain (NCBI)MRPL1
DMDM Disease mutations65008
Blocks (Seattle)MRPL1
SuperfamilyQ9BYD6
Human Protein AtlasENSG00000169288
Peptide AtlasQ9BYD6
IPIIPI00549381   IPI01009811   IPI00967124   IPI00964432   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYD6
IntAct (EBI)Q9BYD6
FunCoupENSG00000169288
BioGRIDMRPL1
STRING (EMBL)MRPL1
ZODIACMRPL1
Ontologies - Pathways
QuickGOQ9BYD6
Ontology : AmiGOstructural constituent of ribosome  protein binding  nucleoplasm  mitochondrion  mitochondrial inner membrane  organelle organization  large ribosomal subunit  mitochondrial translation  poly(A) RNA binding  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  protein binding  nucleoplasm  mitochondrion  mitochondrial inner membrane  organelle organization  large ribosomal subunit  mitochondrial translation  poly(A) RNA binding  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPL1
Atlas of Cancer Signalling NetworkMRPL1
Wikipedia pathwaysMRPL1
Orthology - Evolution
OrthoDB65008
GeneTree (enSembl)ENSG00000169288
Phylogenetic Trees/Animal Genes : TreeFamMRPL1
HOVERGENQ9BYD6
HOGENOMQ9BYD6
Homologs : HomoloGeneMRPL1
Homology/Alignments : Family Browser (UCSC)MRPL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL1
dbVarMRPL1
ClinVarMRPL1
1000_GenomesMRPL1 
Exome Variant ServerMRPL1
ExAC (Exome Aggregation Consortium)MRPL1 (select the gene name)
Genetic variants : HAPMAP65008
Genomic Variants (DGV)MRPL1 [DGVbeta]
DECIPHER (Syndromes)4:78783805-78873944  ENSG00000169288
CONAN: Copy Number AnalysisMRPL1 
Mutations
ICGC Data PortalMRPL1 
TCGA Data PortalMRPL1 
Broad Tumor PortalMRPL1
OASIS PortalMRPL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL1
DgiDB (Drug Gene Interaction Database)MRPL1
DoCM (Curated mutations)MRPL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL1 (select a term)
intoGenMRPL1
Cancer3DMRPL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611821   
Orphanet
MedgenMRPL1
Genetic Testing Registry MRPL1
NextProtQ9BYD6 [Medical]
TSGene65008
GENETestsMRPL1
Huge Navigator MRPL1 [HugePedia]
snp3D : Map Gene to Disease65008
BioCentury BCIQMRPL1
ClinGenMRPL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65008
Chemical/Pharm GKB GenePA30938
Clinical trialMRPL1
Miscellaneous
canSAR (ICR)MRPL1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL1
EVEXMRPL1
GoPubMedMRPL1
iHOPMRPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:33:39 CET 2017

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